BAC Information

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BAC

Clone NameMSMg01-362G24
Chromosome4 (Build37)
Map Location 49,084,774 - 49,288,657
singlet/doubletdoublet
Overlap geneE130309F12Rik
Upstream geneNr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362G24.T7 (MSMg01no362_g24.b1)MSMg01-362G24.TJ (MSMg01no362_g24.g1)
ACCAG471123AG471124
length784770
length of high quality
(start - end)		424 (52 - 475)401 (78 - 478)
definitionCHROMAT_FILE: MSMg01no362_g24.b1 PHD_FILE: MSMg01no362_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:48 2005CHROMAT_FILE: MSMg01no362_g24.g1 PHD_FILE: MSMg01no362_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,084,774 - 49,085,193)(49,288,257 - 49,288,657)
sequence
NNAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCCCTGGCTCTCACAGTCCTATCATGGAATTGTCCCCT
GAATGTCCTCTTCACTTTGGTTCAGAAGTAGTTACAAGTGAAAGGTTCAC
CTGAAGCGTCATCTCCCCACAGAGACAGGAGATTGCATAAAGGATGTCAA
GGGTGTCTGTGAGCAGCATGTCAAGTAACTTGTCACCAGTTTGTAAGTAC
CTGTCCTCAGTCCCTGTCTTGCCTCACTGTGGTGGCCAGCTATTTGTAGT
ATTGGGAACACATCATTCCTTCATCAGCTCAAATAATCTCCATCGTCTTC
CCATAATGATGTCATTTCAGTTTTTCTTCTGCGCGTTGTCGATTCCAGGA
TTCCACCCTCAGGTGGAATCGCACGAGTCATCATTGTTTGCACTTGTAAA
CAGCACGTAATGTTTGGAGTTGTAGAGGTGGATCAGTGGTTAAAGTCACT
CTTTGTTCTTTCTAAAAATTGGTGGCTAATTTCCACCACAAATGCTCTTT
GGTTTCGAAACACTGTAACACCTTTTTTCTGCGGTCTCCTTATTTTCCCA
CAAGTTTTACCCCTTCTTTCTTCTTATTTATTTATTACATCCACCTCTTT
CACCCACATTCTTCTTTTTTTATGTTTTTTAACCATCTTTAATTTTTTTT
CTATTTTCTCTTAAACCCTTCTTCTCCTATTTTATTTCTCTGTTATTTTC
TGTTCTATTCTTACTTCTTTTCTCTTTATAATTA

NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTCCTGGCACTGCTTTCAAT
GGCTTTGTTTTCTTCCTTTCCCTCAACCTGACTCCTAAATGATGGTGCCC
TCCAAAGCTCTGTTCTTCACACCCTCCTAATTATCTTTCCCTTCTTTCTC
ATTTAGAGGTTCATTTCTTTCCACCACATCCATTTTCACACTAACTCCAA
ATTCCTCCAGTCGCTGTTATTTCCTGTTTGTTTTAGCCTTCTCAGCAGCA
TAGTCTTCATAGATGCTGCAGATGCTGAAGCTGGAAACAGCATTTTCTTC
CCTCTTGTATTCTCTCTCTTACTACCGTCCATCACCATGGTCTCAATCTT
ATAGGAATGTCAGTAGAATCTTTGGATCCTCCTTCCTTCAATTCATGCCC
TATCCAGCCAGTAGCTAACTCTTATGATTTCAAGGTCCACTTGTAGTCAT
CCCACTTTCTTTCATCACTGGGAGCTGCCTTATTCATGACTCATGTGATC
TTATCTAGATCACTGAAAATTGNTCTGTCTGCTCACCTTTGGGATTTCAA
GACCTCTATTTCATCATTGACTCTGCTGTTAAAGAAGTAAATCCTACCTT
GCCTATCATCAGGCCTAGTCTGAAAGTGGAGACAAGATTTTACCTGATTT
CAGGCCCCCTGGCCCCACCGAATTGAAGAATTGTTGTTACAAAGGAAGGC
TTGCCTAAAAAAAATTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_g24.b1 MSMg01no362_g24.b1 CHROMAT_FILE:
MSMg01no362_g24.b1 PHD_FILE: MSMg01no362_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:48 2005
         (424 letters)



>mm_chr4_49084570_49085393
          Length = 824

 Score =  727 bits (376), Expect = 0.0
 Identities = 409/420 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctccctggctctcacagtcctatcatggaattgtcccctgaatgtcctcttcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctccctggctctcacagtcctatcatggaattgtcccctgaatgtcctcttcac 264

                                                                       
Query: 65  tttggttcagaagtagttacaagtgaaaggttcacctgaagcgtcatctccccacagaga 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 tttggttcagaagtagttacaagtgaaaggttcacctgaagcatcatctccccacagaga 324

                                                                       
Query: 125 caggagattgcataaaggatgtcaagggtgtctgtgagcagcatgtcaagtaacttgtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggagattgcataaaggatgtcaagggtgtctgtgagcagcatgtcaagtaacttgtca 384

                                                                       
Query: 185 ccagtttgtaagtacctgtcctcagtccctgtcttgcctcactgtggtggccagctattt 244
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 385 ccagtttgtaagtacctgtcctcagtccctgccttgcctcactgtggtggccggctattt 444

                                                                       
Query: 245 gtagtattgggaacacatcattccttcatcagctcaaataatctccatcgtcttcccata 304
           |||||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||
Sbjct: 445 gtagtattgggagcacatcatttcgtgatcagctcaaataatctccatcgttttcccata 504

                                                                       
Query: 305 atgatgtcatttcagtttttcttctgcgcgttgtcgattccaggattccaccctcaggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgatgtcatttcagtttttcttctgcgcgttgtcgattccaggattccaccctcaggtg 564

                                                                       
Query: 365 gaatcgcacgagtcatcattgtttgcacttgtaaacagcacgtaatgtttggagttgtag 424
           |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 565 gaatcgcatgagtcatcattgtttgcacttgtaaacagcatgtagtgtttggagttgtag 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_g24.g1 MSMg01no362_g24.g1 CHROMAT_FILE:
MSMg01no362_g24.g1 PHD_FILE: MSMg01no362_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:48 2005
         (401 letters)



>mm_chr4_49288057_49288857
          Length = 801

 Score =  745 bits (385), Expect = 0.0
 Identities = 397/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctcctggcactgctttcaatggctttgttttcttcctttccctcaacctgactccta 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 601 cctctcctggcactgctttcaatggcttttttttcttcctttccctcaacctgactccta 542

                                                                       
Query: 61  aatgatggtgccctccaaagctctgttcttcacaccctcctaattatctttcccttcttt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 aatgatggtgccctccaaagctctgtccttcacaccctcctaattatctttcccttcttt 482

                                                                       
Query: 121 ctcatttagaggttcatttctttccaccacatccattttcacactaactccaaattcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcatttagaggttcatttctttccaccacatccattttcacactaactccaaattcctc 422

                                                                       
Query: 181 cagtcgctgttatttcctgtttgttttagccttctcagcagcatagtcttcatagatgct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagtcgctgttatttcctgtttgttttagccttctcagcagcatagtcttcatagatgct 362

                                                                       
Query: 241 gcagatgctgaagctggaaacagcattttcttccctcttgtattctctctcttactaccg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 gcagatgctgaagctggaaacagcattttcttcccttttgtattctctctcttactaccg 302

                                                                       
Query: 301 tccatcaccatggtctcaatcttataggaatgtcagtagaatctttggatcctccttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccatcaccatggtctcaatcttataggaatgtcagtagaatctttggatcctccttcct 242

                                                    
Query: 361 tcaattcatgccctatccagccagtagctaactcttatgat 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaattcatgccctatccagccagtagctaactcttatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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