BAC Information

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BAC

Clone NameMSMg01-362I11
Chromosome4 (Build37)
Map Location 96,351,195 - 96,512,166
singlet/doubletdoublet
Overlap geneLOC100039415, LOC620779
Upstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362I11.T7 (MSMg01no362_i11.b1)MSMg01-362I11.TJ (MSMg01no362_i11.g1)
ACCAG471192AG471193
length755771
length of high quality
(start - end)		475 (70 - 544)508 (70 - 577)
definitionCHROMAT_FILE: MSMg01no362_i11.b1 PHD_FILE: MSMg01no362_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:56 2005CHROMAT_FILE: MSMg01no362_i11.g1 PHD_FILE: MSMg01no362_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,351,195 - 96,351,669)(96,511,659 - 96,512,166)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAAATCTTGCACTTCCACCTCCCAGGTGTTGGGATTATCTCCAAGT
ACTAGCACCCATAGCCTAAAATGTTATTACTTTCAATTTAAACTAAGAAC
TTTATGCTATTAAAAACAACTTGCTCCAGCTCCTGTTTACAACTTGAGGC
ACTTAAGTAGCCCATTGATGGATTTCCAATTAAGTTTTTACTTCTTCAAT
CAGCTACCCAGTAGGAGTTAGAATGGGATTTCCAAACAAATTCACTAGGC
TTGGGATGTCTGTCTCCTGCTAGAGTTACTTCAGATGGCTGAATTCTATG
CACCTATAACACAGGTTTATTTAGATGACAATAGTACATATTCATAAGCC
ATGTATGGTACAGACTGCACAAACAATACTTACATATCTTATGCAGAATC
TAAAGTAGACCTTATATTGTCATATTTTCAATGAGAGGAGAGTTATTTTT
GCACTTTTGAGATTTTTAGGTCAACATTCTTCTACTTTTAGCTTGTTTGG
GTGCCTCATTTCCATGATTGCTGTATTATTATTATTACTACTACCATGCT
TAGTGTATATTTGCGCACGTGCCCAAGTGTGTGGTTGACTTTGTGGAATT
TATTTATCTCTTTTCTCCATTTTTTTGTCATCCCAACCGCTTTGAATTAC
TCTGCCTTGTACCTCCTCCTCTCAACGCCCACGCATATCTCCTGTTCCCT
CCCCG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTAATTCCTTTTCACTTTTAATGGCTTT
GACAGGGACTAATTTGCAGGCACAATTGCTAATTTTACAGCGGCTTTTTG
CTTTGTCAGCATGAGACTGACTAAGGAGTTATTAATAGAAGAATGGGATT
CCCTTTTCATCCTTTTGCTCTTGACTGGAGGAGGAGGTGGGGTAAAAATC
CATTATTTAAAAACATTTGTTCTTCCTGAATGGTCATCATTCCAGCCCTC
CACTTTCTCCTAAACTGTAGCAGTATCAGCAATCATATAACCACTTTGTC
TTCCTGAATGACTCTTGGCTTCACTCCAGTTTACACCACTGCTATAAGAC
CATCTTCGAGTCTGCTTTGGAAATCAGATCCAAAAATCAGAATTCTCTCA
GTATTTCTGTGTGGTTTTCTAAATATTATTTCCTCAACATAAGAATTTAT
AAGGACCTCAGTGACCAGCCTTAGGATTTTCTGAATAACTGCTATATGGG
GGAAAGATGGTCTGGAAGTTGATTGTGCCTGCTAGCTGCACAGAGGATGG
TTGCTCAGCAGGGACCTATTTTCAAGATTACTGTTTCGTTCCCGCAAATA
CCTCTTAAATATATATATATTTATATATATCCTCCCCCTTTTACTCTGCC
ATTTTACAGTTACTATGTTTGTTGCTTCCCATCGTTCAGCCCACCCCTAT
TGTTTCTACACCCCCCTGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_i11.b1 MSMg01no362_i11.b1 CHROMAT_FILE:
MSMg01no362_i11.b1 PHD_FILE: MSMg01no362_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:56 2005
         (475 letters)



>mm_chr4_96350995_96351869
          Length = 875

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctcccaggtgttgggattatctccaagtactagcacccatagcctaaaatgttatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctcccaggtgttgggattatctccaagtactagcacccatagcctaaaatgttatta 260

                                                                       
Query: 61  ctttcaatttaaactaagaactttatgctattaaaaacaacttgctccagctcctgttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcaatttaaactaagaactttatgctattaaaaacaacttgctccagctcctgttta 320

                                                                       
Query: 121 caacttgaggcacttaagtagcccattgatggatttccaattaagtttttacttcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacttgaggcacttaagtagcccattgatggatttccaattaagtttttacttcttcaa 380

                                                                       
Query: 181 tcagctacccagtaggagttagaatgggatttccaaacaaattcactaggcttgggatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagctacccagtaggagttagaatgggatttccaaacaaattcactaggcttgggatgt 440

                                                                       
Query: 241 ctgtctcctgctagagttacttcagatggctgaattctatgcacctataacacaggttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtctcctgctagagttacttcagatggctgaattctatgcacctataacacaggttta 500

                                                                       
Query: 301 tttagatgacaatagtacatattcataagccatgtatggtacagactgcacaaacaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagatgacaatagtacatattcataagccatgtatggtacagactgcacaaacaatac 560

                                                                       
Query: 361 ttacatatcttatgcagaatctaaagtagaccttatattgtcatattttcaatgagagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacatatcttatgcagaatctaaagtagaccttatattgtcatattttcaatgagagga 620

                                                                  
Query: 421 gagttatttttgcacttttgagatttttaggtcaacattcttctacttttagctt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagttatttttgcacttttgagatttttaggtcaacattcttctacttttagctt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_i11.g1 MSMg01no362_i11.g1 CHROMAT_FILE:
MSMg01no362_i11.g1 PHD_FILE: MSMg01no362_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:56 2005
         (508 letters)



>mm_chr4_96511459_96512366
          Length = 908

 Score =  936 bits (484), Expect = 0.0
 Identities = 502/508 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttaattccttttcacttttaatggctttgacagggactaatttgcaggcacaattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tctttaattccttttcacttttaatggctttgacagggactaatttgcaggcacaattgc 649

                                                                       
Query: 61  taattttacagcggctttttgctttgtcagcatgagactgactaaggagttattaataga 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taattttacagtggctttttgctttgtcagcatgagactgactaaggagttattaataga 589

                                                                       
Query: 121 agaatgggattcccttttcatccttttgctcttgactggaggaggaggtggggtaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agaatgggattcccttttcatccttttgctcttgactggaggaggaggtggggtaaaaat 529

                                                                       
Query: 181 ccattatttaaaaacatttgttcttcctgaatggtcatcattccagccctccactttctc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 528 ccattatttaaaaacatttgttcttcctgaaaggtcatcattccagccctccactttctt 469

                                                                       
Query: 241 ctaaactgtagcagtatcagcaatcatataaccactttgtcttcctgaatgactcttggc 300
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 468 ctaaactgtagcagtatcagcagtcatataaccgctttgtcttcctgaatgactcttggc 409

                                                                       
Query: 301 ttcactccagtttacaccactgctataagaccatcttcgagtctgctttggaaatcagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcactccagtttacaccactgctataagaccatcttcgagtctgctttggaaatcagat 349

                                                                       
Query: 361 ccaaaaatcagaattctctcagtatttctgtgtggttttctaaatattatttcctcaaca 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 348 ccaaaaatcagaattctctcagtatttctgtatggttttctaaatattatttcctcaaca 289

                                                                       
Query: 421 taagaatttataaggacctcagtgaccagccttaggattttctgaataactgctatatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taagaatttataaggacctcagtgaccagccttaggattttctgaataactgctatatgg 229

                                       
Query: 481 gggaaagatggtctggaagttgattgtg 508
           ||||||||||||||||||||||||||||
Sbjct: 228 gggaaagatggtctggaagttgattgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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