BAC Information

Click to search

BAC

Clone NameMSMg01-363A11
Chromosome4 (Build37)
Map Location 111,393,059 - 111,393,297
singlet/doubletsinglet
Overlap geneSpata6
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneLOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A11.T7 (MSMg01no363_a11.b1)MSMg01-363A11.TJ (MSMg01no363_a11.g1)
ACCAG471571AG471572
length754744
length of high quality
(start - end)		541 (42 - 582)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no363_a11.b1 PHD_FILE: MSMg01no363_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:36 2005CHROMAT_FILE: MSMg01no363_a11.g1 PHD_FILE: MSMg01no363_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACCAGACTTCCAAAGAAGACATAATACCAATATTCCTAAAACTATTCC
ATAAAATAGAAACAGAAGCAACACTACCTAATTCCTTCTATGAAGTCACA
ATTACTCTGATATCTAAACTAAACAAGGACCCAACCAAAAAGAGAACTTC
CGACCAATCTCGATTATGAATGTCCATGCAAAATTACTCAATTAAATTCT
TGCAAACCAAATCTAAGAACTCATCAAAGCCATCATTCATCATGATCAAG
TAGGCTTCATTCCAGGGATACAAGGTTGGTTCAATATACAAAAACCCATT
AACATAATTCACTATATAAAAAAACTAAAAGAAAAAAATCACATGATCAT
CTCCCTAAATATAGAAAAAGCATTGACAAAATTCAACAGCCCTTTCTGTT
AAAAGTATTAGAGAGATCAGGAATTCAAGGCCCATACCTAAACATAATGA
AAGCAATTTATTGCAAACCAACAGCCATTATCAAATTAAATGGAGAGGTA
CTTGAAGCAAGCCCACTAAAATCAGGGAAAAGACAAGGATGCCATTCTCC
CCATATCTATTCAATATAGTACTCAAAGTGCTAGCTAGAACAATTAGACA
TACAAAAGACATCATTGGGATACAAATTTGGCAAGAAGAAGCAAGGGATC
ACTATTTGCCGATGATAGGACAGTATACATTAGTGACCCCCGATATTCTC
CCAG

TTTCGATGATGTGGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTACTCTTTTGGTGAGGAACT
CCTGAACCCTTGCTCCAGTCTGGGGTGTGTAGCATTTCCGCTTTCAGATC
CTTCCCCTAGCTTCCAGTTAAAGTAGGAACGCCTTTTCAGTCATGGTGGA
GTCCCTAACTCCAAAAACAACTTACTTGTGACGTCATTGCACCAAGTTTT
CTTAGTTTCTCCTCTCAGAATAAACCCAACTCCTCAGAAGCCACTTCAGC
TCTTCCCTCCAGTATTTTTTACTCCAGACTTTGCATCCTTCCAATCCTCC
CAAGAAAGACCTGGTCAGCTTTTCGGACAACTACTGCTTGGAGCTTGTAA
CTCCACTCATCTACTCTCAATTCAGGGGACTCTGTCCAGCCTCCTTCAGT
AAATCTAGTTGAGGTGGGGAGCCCCTCCTGCCATCCAGTGAGGGGCTGAG
GCCTTTCCGGGTGTTGAGAAGTCCCACCTCCCTTTGATACCTGCACTCTC
CTTCAGAGATTTCTGAAGTCCTTCAGTGTCCTTCCCCAGAGACTTCCTTT
TCTCCCCTTATAGGAGAGGCATTCTAGGAGAACCTCTTTAATTTCTTTAT
TCTGCTCGTTTTTCACTGTTTCTATCCTTGGAAAGGCCCTCCCTTTAAGA
CCCCAGCCTCTACTTTGCCTGGTTTTTTCTGCCTTATCCAAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a11.g1 MSMg01no363_a11.g1 CHROMAT_FILE:
MSMg01no363_a11.g1 PHD_FILE: MSMg01no363_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:37 2005
         (240 letters)



>mm_chr4_111392859_111393498
          Length = 640

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttactcttttggtgaggaactcctgaacccttgctccagtctggggtgtgtagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttactcttttggtgaggaactcctgaacccttgctccagtctggggtgtgtagcat 260

                                                                       
Query: 61  ttccgctttcagatccttcccctagcttccagttaaagtaggaacgccttttcagtcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccgctttcagatccttcccctagcttccagttaaagtaggaacgccttttcagtcatg 320

                                                                       
Query: 121 gtggagtccctaactccaaaaacaacttacttgtgacgtcattgcaccaagttttcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggagtccctaactccaaaaacaacttacttgtgacgtcattgcaccaagttttcttag 380

                                                                      
Query: 181 tttctcctctcagaataaacccaactcctcagaagccacttcagctcttccctccagta 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctcctctcagaataaacccaactcctcagaagccacttcagctcttccctccagta 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |