BAC Information

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BAC

Clone NameMSMg01-363H17
Chromosome4 (Build37)
Map Location 39,762,109 - 39,764,026
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039487, 1700009N14Rik, LOC435775
Downstream geneLOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363H17.T7 (MSMg01no363_h17.b1)MSMg01-363H17.TJ (MSMg01no363_h17.g1)
ACCAG471911AG471912
length767759
length of high quality
(start - end)		618 (33 - 650)466 (78 - 543)
definitionCHROMAT_FILE: MSMg01no363_h17.b1 PHD_FILE: MSMg01no363_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:12 2005CHROMAT_FILE: MSMg01no363_h17.g1 PHD_FILE: MSMg01no363_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,762,109 - 39,762,721)(39,763,565 - 39,764,026)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATTAGTTTTCTTA
TTCTGGCTTTGTTTCAGCTTTTCTAGCTCCCTCTCATATGAATTGATTCC
CTTCTGTTCCTCATACAAGGCTGGCATGCTGCCACTGCCCTTTATGACAA
TGCTAGAGAGCCTCTGGCTTCTTTCTCGCATGTTAAATGCAGTTTTGTAA
GTCAGACCTATTCCTTTCTTGCCTGGCACCCTGATTTTGGAGGCCATGCT
TCTAATAATTTCATGTCTTCATTTTAGCTACGAGTTCCACTGATATCTTG
TCTGAGTACTTAACTGTATTTTTTTCCATTTTTTATTAGGTATTTAGCTC
ATTTACATTTCCAATGATATACCAAAAGTCCCCCCTTAACTGTATTTTTA
AAGCTTGGAAATATATTCACATTTAAAAAAATGTAAGAGGGAAAATGAAA
CAAAAGCCCTATACACTTAAAATCTAAATCTTCACAGAACGTTTTCTCAC
CACACAAAGAAACTCTTCCTGTATCCCTATTAAAATTCATCCTTTTTCAG
GTTTTCAATTTCTTTAAATCTGAGTGAGGGAATTATAGCATATATTGTTA
AACTTATCATTACATGAATTTAAAGGTACTTAATAGACTTTTTATTCTCA
AGAGGCTCAATTAAAGTGCTTTTCTTGTCCAAGGACAGAGGGTTTTAATC
TTTATCAAACTCATGACAGTGTGACNATTCAGGNAGAACAATGAAAATTT
ANGTCATGATCTGTATC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCTGTTGCTGAGGGAGAGC
CAGGCACATAACAGGTTAGTGCAATCAGGTCTCAGAGATTCTTACTAGAA
CTGCCTTCAACAAGGTCACCAGCTATATCAAGATGGGGCTGGGGAATGTT
TGAATCAAAGGAGAGAGTCTTGTTTCCTAATTCCTAGCTTCCTCTTTGTG
AAGTCACAGAAGTTTATAATAAAGGCTATACTAAAATGTATGGGAAGCAA
TGTATATTGCTTGCTTATTTCATGCATGCAATGACTTACATTGATTTTAA
AAAATTACAGAGTTGGATAACCATTACAAAAATGAAAATTAAATCAAATC
CATTAAAAGTCAGATTTCACTGTAGTTCAAAAGAGCATGTGTCTAATCTT
AAATACAACTGGACAATTGTTCTTAATTTCTTTTCTTGAAAGGTTTTATG
ACATTTTATTAGTTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNTGNNNNN
GNNNGAGTGGTTTTGGNGAAGATNNGATGGNTTTTTGGNNAGGNNNTTAN
NNTAGNTTTANTGGTTTTTGTTTNTTGAANGTTTAGTTAATNTTTTGGTT
TTGAAATAATTAANNATTAAGAAATTTTTTTTTTAGGTTTTTGGAAATTT
TTTTAAATAAGGTTTTTGATATGATTAGANAATGTTTTTTATTGTAAATT
TTTATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_h17.b1 MSMg01no363_h17.b1 CHROMAT_FILE:
MSMg01no363_h17.b1 PHD_FILE: MSMg01no363_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:12 2005
         (618 letters)



>mm_chr4_39761904_39762921
          Length = 1018

 Score = 1131 bits (585), Expect = 0.0
 Identities = 606/613 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   attagttttcttattctggctttgtttcagcttttctagctccctctcatatgaattgat 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attagttttcttaacctggctttgtttcagcttttctagctccctctcatatgaattgat 265

                                                                       
Query: 66  tcccttctgttcctcatacaaggctggcatgctgccactgccctttatgacaatgctaga 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 266 tcccttctgttcctcatacaaggctggcatgctgccactgccctttatgacaattctaga 325

                                                                       
Query: 126 gagcctctggcttctttctcgcatgttaaatgcagttttgtaagtcagacctattccttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 gagcctctggcttctttctcgcatgttaaatgcagttttgtaagtcagagctattccttt 385

                                                                       
Query: 186 cttgcctggcaccctgattttggaggccatgcttctaataatttcatgtcttcattttag 245
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 cttgcctggcaccctggttttggaggccatgcttctaataatttcatgtctccattttag 445

                                                                       
Query: 246 ctacgagttccactgatatcttgtctgagtacttaactgtatttttttccattttttatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctacgagttccactgatatcttgtctgagtacttaactgtatttttttccattttttatt 505

                                                                       
Query: 306 aggtatttagctcatttacatttccaatgatataccaaaagtccccccttaactgtattt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aggtatttagctcatttacatttccaatgatataccaaaagtccccccttaactgtattt 565

                                                                       
Query: 366 ttaaagcttggaaatatattcacatttaaaaaaatgtaagagggaaaatgaaacaaaagc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttaaagcttggaaatatattcacatttaaaaaaatgtaagagggaaaatgaaacaaaagc 625

                                                                       
Query: 426 cctatacacttaaaatctaaatcttcacagaacgttttctcaccacacaaagaaactctt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cctatacacttaaaatctaaatcttcacagaacgttttctcaccacacaaagaaactctt 685

                                                                       
Query: 486 cctgtatccctattaaaattcatcctttttcaggttttcaatttctttaaatctgagtga 545
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 686 cctgtatccctattaaaattcatcctttttcagattttcaatttctttaaatctgagtga 745

                                                                       
Query: 546 gggaattatagcatatattgttaaacttatcattacatgaatttaaaggtacttaataga 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gggaattatagcatatattgttaaacttatcattacatgaatttaaaggtacttaataga 805

                        
Query: 606 ctttttattctca 618
           |||||||||||||
Sbjct: 806 ctttttattctca 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_h17.g1 MSMg01no363_h17.g1 CHROMAT_FILE:
MSMg01no363_h17.g1 PHD_FILE: MSMg01no363_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:12 2005
         (466 letters)



>mm_chr4_39763391_39764256
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 462/462 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagctgttgctgagggagagccaggcacataacaggttagtgcaatcaggtctcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 taaagctgttgctgagggagagccaggcacataacaggttagtgcaatcaggtctcagag 577

                                                                       
Query: 61  attcttactagaactgccttcaacaaggtcaccagctatatcaagatggggctggggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 attcttactagaactgccttcaacaaggtcaccagctatatcaagatggggctggggaat 517

                                                                       
Query: 121 gtttgaatcaaaggagagagtcttgtttcctaattcctagcttcctctttgtgaagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtttgaatcaaaggagagagtcttgtttcctaattcctagcttcctctttgtgaagtcac 457

                                                                       
Query: 181 agaagtttataataaaggctatactaaaatgtatgggaagcaatgtatattgcttgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaagtttataataaaggctatactaaaatgtatgggaagcaatgtatattgcttgctta 397

                                                                       
Query: 241 tttcatgcatgcaatgacttacattgattttaaaaaattacagagttggataaccattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttcatgcatgcaatgacttacattgattttaaaaaattacagagttggataaccattac 337

                                                                       
Query: 301 aaaaatgaaaattaaatcaaatccattaaaagtcagatttcactgtagttcaaaagagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaaatgaaaattaaatcaaatccattaaaagtcagatttcactgtagttcaaaagagca 277

                                                                       
Query: 361 tgtgtctaatcttaaatacaactggacaattgttcttaatttcttttcttgaaaggtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtgtctaatcttaaatacaactggacaattgttcttaatttcttttcttgaaaggtttt 217

                                                     
Query: 421 atgacattttattagttgtgtgtgtgtgtgtgtgtgtgtgtg 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atgacattttattagttgtgtgtgtgtgtgtgtgtgtgtgtg 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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