BAC Information

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BAC

Clone NameMSMg01-363I18
Chromosome4 (Build37)
Map Location 72,326,441 - 72,326,810
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667638, EG667649, Tle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363I18.T7 (MSMg01no363_i18.b1)MSMg01-363I18.TJ (MSMg01no363_i18.g1)
ACCAG471959AG471960
length769809
length of high quality
(start - end)		530 (38 - 567)371 (77 - 447)
definitionCHROMAT_FILE: MSMg01no363_i18.b1 PHD_FILE: MSMg01no363_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:17 2005CHROMAT_FILE: MSMg01no363_i18.g1 PHD_FILE: MSMg01no363_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAAC
ATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC
TAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAG
TATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATT
GGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA
TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACA
GCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGCCAATGGCC
TTTCTGTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAGAAC
ACCCTTCTCAATAGTCACAAATAATAGAAAATATCTCAGCGTGACTCTAA
CTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAA
GAAATTAAAGAAGACCTCAGAAGATGGAAAGATCTCCCATGCTTATGGAT
TGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCTAAAGCAATCTACA
GATTCAATGGCATCCCCCATCAAAATTCCACCTCAGTTCTTCTACGAATT
AAAAAGAGGAATTGGCAATTCCTCTGGAAAAAAAAAAAACTTAGGATAGA
AAAACCTCTCTCAAGGAAA

NCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGTAGAGAAGAAAGAATA
GTGGGAGCCAAAAGGGTCAAAGAAACTGGGTAAGCATTGATCCCAGAATC
AACTAAGGAGGCTCATGGGGGCCCACAGAAGCTGAAATGGCAATTGTGGA
GCCTGCATGGGCCTGTGCTAGATCCTCTGCATATACCTTATGATTGTTGT
TTTTTTGAGACCCTTTTCTTATGCTTTCTTCCATATTTGTTTGATGTCCC
TGTGAAACCTGATCTTTTCTGAGGGAAGGTGGGAGTGAAGGATCTGTGGG
AAACAGGAAGTGGGAGGGAGAAAGTTGGAGACCAGAGGAAAGGAACCTGT
TGTCAGGATGTATTACATGAGAGAAAAGAAAGAAAGAAAGAACGAAAGAA
AGAGAGAGGCGGGGGAGAGGGAGGTAGTTTCTTTTTTTTTTCTTTTGTTT
TTCACGTTTTCTATTTCATCTACTTTTCTTTTTTTTAGGATGTTTTTTTT
GCTTCTATATAGTGGTAATATTTAATTTAATATTCTTTCTTCGGCACTCT
CTTTCCTTACACTTTCGATTCATTACGTTTCTATTTTTGTCTATTTTGAT
ATAAATATTTATTTGTTATTATTATATTTATCTCCAATATCTATAATTTT
ATTAATTATATAACTCTGCTCTCGAGTATTTTTTTTTTATTTATGTTTTC
TTCTCCTTTTTCTCTTCTGTGTTCTTGTTTTACTTCTTACTCTTTCTCTA
CGTGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_i18.g1 MSMg01no363_i18.g1 CHROMAT_FILE:
MSMg01no363_i18.g1 PHD_FILE: MSMg01no363_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:18 2005
         (371 letters)



>mm_chr4_72326052_72326822
          Length = 771

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/371 (98%), Gaps = 1/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagaagtagagaagaaagaatagtgggagccaaaagggtcaaagaaactgggtaagca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 759 tccagaagtagagaagaaagaatagtgggagccaaaagggtcaaagaaactgagtaagca 700

                                                                       
Query: 61  ttgatcccagaatcaactaaggaggctcatgggggcccacagaagctgaaatggcaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttgatcccagaatcaactaaggaggctcatgggggcccacagaagctgaaatggcaattg 640

                                                                       
Query: 121 tggagcctgcatgggcctgtgctagatcctctgcatataccttatgattgttgttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 639 tggagcctgcatgggcctgtgctagatcctctgcatataccttatgattgttg-tttttt 581

                                                                       
Query: 181 gagacccttttcttatgctttcttccatatttgtttgatgtccctgtgaaacctgatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gagacccttttcttatgctttcttccatatttgtttgatgtccctgtgaaacctgatctt 521

                                                                       
Query: 241 ttctgagggaaggtgggagtgaaggatctgtgggaaacaggaagtgggagggagaaagtt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttctgagggaaggtgggaatgaaggatctgtgggaaacaggaagtgggagggagaaagtt 461

                                                                       
Query: 301 ggagaccagaggaaaggaacctgttgtcaggatgtattacatgagagaaaagaaagaaag 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 460 ggagaccagaggaaaggaacctgttttcaggatgtattacatgagagaaaagaaagaaag 401

                      
Query: 361 aaagaacgaaa 371
           || ||| ||||
Sbjct: 400 aacgaaagaaa 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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