Query= MSMg01no363_n23.b1 MSMg01no363_n23.b1 CHROMAT_FILE:
MSMg01no363_n23.b1 PHD_FILE: MSMg01no363_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:44 2005
(611 letters)
>mm_chr4_40137172_40138182
Length = 1011
Score = 1127 bits (583), Expect = 0.0
Identities = 601/607 (99%)
Strand = Plus / Plus
Query: 5 gaattcactgcttctcttggcctgcaggccctgattattcagggcaaattcaggcccacg 64
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgcttcccttggcctgtaggccctgattattcagggcaaattcaggcccacg 264
Query: 65 tgtagtcagtggagtatatcccgttgccctccattctctgatccatcctgctggcctccc 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtagtcagtggagcatatcccgttgccctccattctctgatccatcctgctggcctccc 324
Query: 125 tattgcttttaattcagttttcacttaggtgtagctgtgtgagcttcccgctgaattaag 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tattgcttttaattcagttttcacttaggtgtagctgtgtgagcttcccgctgagttaag 384
Query: 185 aggagatccagatcctcttgagttgatcccagggagtatggattcctgctctactctgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggagatccagatcctcttgagttgatcccagggagtatggattcctgctctactctgct 444
Query: 245 cctgcctgactgacccagttaaggctttgagaacaacctgcgtgcagagcagtgtctggc 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgcctgcctgacccagttaaggctttgagaacaacctgcgtgcagagcagtgtctggc 504
Query: 305 agattcagtgacgtgcctgggtttatggctttttctttttggtccatgtgtaagctaagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agattcagtgacgtgcctgggtttatggctttttctttttggtccatgtgtaagctaagt 564
Query: 365 tcactcttcactcacgtgctacatcttttattagcctaacaccacgagagttcaactcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcactcttcactcacgtgctacatcttttattagcctaacaccacgagagttcaactcct 624
Query: 425 atggctcccgccggggtaacgacgccatcatggcccgggggacatttgccaacattcgct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atggctcccgccggggtaacgacgccatcatggcccgggggacatttgccaacattcgct 684
Query: 485 tgctgaacaagtttctgaacaagcaggcacctcagactgtccatctcccttcaggagaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 tgctgaacaagtttctgaacaagcaggcacctcagactgtccatctcccctcaggagaaa 744
Query: 545 ccgtgagtatcagaaaccagtgtctgtcaggctctgacgcctcttcttcatggtggcctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccgtgagtatcagaaaccagtgtctgtcaggctctgacgcctcttcttcatggtggcctt 804
Query: 605 ccttatc 611
|||||||
Sbjct: 805 ccttatc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_n23.g1 MSMg01no363_n23.g1 CHROMAT_FILE:
MSMg01no363_n23.g1 PHD_FILE: MSMg01no363_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:44 2005
(383 letters)
>mm_chr4_40320112_40320891
Length = 780
Score = 710 bits (367), Expect = 0.0
Identities = 378/383 (98%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 1 tcccatcccaaatcctaccagtgcttactgacaaactcatatggtgcccagtatggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcccatcccaaatcctaccagtgcttactgacaaactcatatggtgcccagtatggaatt 521
Query: 61 ttccaagaagattcttggtccctcctcgttgtcttcatatgttcaatgagtgaaggacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttccaagaagattcttggtccctcctcgttgtcttcatatgttcaatgagtgaaggacac 461
Query: 121 tggcctgtgatgtcaactatctcaagcatttatcagattgtcttttgtgacatttgatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tggcctgtgatgtcaactatctcaagcatttatcagattgtcttttgtgacatttgatca 401
Query: 181 caaggcctgtgttttgggtgggtctgaccctgtaccaattctgcgagtgcaacctaagct 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caaggcctgtgttttggatgggtctgaccctgtaccaattctgcgagtgcaacctaagct 341
Query: 241 taccagtcaactgatgattagttcttgagtgggtatatgcttatctctcaattacaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taccagtcaactgatgattagttcttgagtgggtatatgcttatctctcaattacaatca 281
Query: 301 aaaattggttgttgttattattagtagtagtaaaattagtagtagtagtagtagtagtag 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaattggttgttgttattagtagtagtagtaaaattagtagtagtagtagtagtag--- 224
Query: 361 cagtagtgttttgttaaaatttg 383
|||||||||||||||||||||||
Sbjct: 223 cagtagtgttttgttaaaatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 780
Length adjustment: 9
Effective length of query: 374
Effective length of database: 771
Effective search space: 288354
Effective search space used: 288354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
