BAC Information

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BAC

Clone NameMSMg01-363P19
Chromosome4 (Build37)
Map Location 79,664,576 - 79,665,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P19.T7 (MSMg01no363_p19.b1)MSMg01-363P19.TJ (MSMg01no363_p19.g1)
ACCAG472292AG472293
length1,253760
length of high quality
(start - end)		---500 (78 - 577)
definitionCHROMAT_FILE: MSMg01no363_p19.b1 PHD_FILE: MSMg01no363_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:54 2005CHROMAT_FILE: MSMg01no363_p19.g1 PHD_FILE: MSMg01no363_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACTAAGACGTAACGAGGGCCAGAGGGGGGTGCTGTTGCGCCCCTGCCC
GGAATATATAAATAAGCTCTGACAAACTCAGTGAGTACGTGGTTGACCTT
ATATCACAATATTCACATTATTTGCACTGCTACTAGCCAGCGACCGTCAT
CTCTACTCTCCGTAGATGATTCTACCGACGACACTGCATTACTACCCCGC
CGCGGTAGCTATGCAACGGAGCTCGATATCGTCGCTATATTATCATGACG
TCTTCGGATGAATCGATCAGCCGATCACGAGCAAAACGAAGAGCATCACA
TATAGTCAGCATGACACTGATGAGTGTCGGTACCTCTATTACCGCCCCTC
TTATACGTATGCCGTATCGCTTACCCGTAGCGCACAACTTAGTGATACTA
TAACTTATATATGTTCGCACCGTACGATTCTTATACCGCTTTTCCGACAT
ATCTCACATAACTTCAGATTGCTAACGCTATTTATATTACTCTACACACT
CACTATAAACTTGTACTGCTATACTTGCCCAGCTATATACTGCGCGAGCC
ATACTTTCCATGTGCNCTCATCATTACAGATTGTGCAGGCTATATATCTT
CCGTACNTTCGCGATGTTAACACCAATAGATCTAACGCTGTGTCAAGCTC
GCTTATTATGTTTACATATCTATAGTAGTTGACTACGCTGATTACGCAAC
CAAAATATTTGTCTACAGCCCACATCTATAATGAGAAGCTCACGCCTCTA
ACGATTATATATTGCACCGATTTTATCGCCCCCGCTTACTAGATATGTCA
ATACGATCGATATCTTGACATGGGCGCAGCACGTTTGATGCCACTGATCA
CTCTGAAACCATCATCTCTCTTTCTACACCCAGCNACCCACGTATACGTA
ATAGAATAACCAGATTCCGTTCAGTCGTACCATNGAGGCAAGACGAGCAC
ACATAACATTCTGTGTGAGTAAGATATATCACAACGCTGTTCCGCATGCG
ACTCGATTACGCATTGTTATTATATTACGCAATTCGCGCAAAATCTATCG
TCTCACCTCCACGTGTGTATTATTGTTATGATATCTGCGCATACCGCAAT
GAATTATATTATAGCGTGCGTAATATCACATCACCCTAGTAATTACTTTA
GTATGGCGCGACACCGCCGAACGGACAGCAACTTATGAGTGAATATAATA
TATGCGTGTTCTGGCCATACGTATCCTACGCGCGAGCTCTATTACCTTTG
TCT

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATCCCTGGAAGAAAATCTGT
GAGAGTTTATCTAATTAAGTCAATTTAAATAGGAAGGCACACCCTAAACG
CAGTGCCACTATTTCTTCAGGTGAAATCTAGAATGGCATAAAAACAAAGA
TTAACTGAGCACTAACATTAGTCTGACATGACTTCTTTGCCAGGAATGAC
TATAACCTGAAAGGGTGAACCAAAATAAACTCCTTTTCATAACCCCTTTG
CTTAGAGTATTTTATCAGAGTAACCACACAAATAACTGATACTTACTTTT
CATATTTAATCCTTTGAAAGAATTTTGTAGGGGTTTAGCAAGAGATAATA
CAGATATTTTTATTTGGGTCTTTCAATATATTTTTATCTCATTCATTTTA
CTGTGTTTTGAGCAATTCTGTCAGCTAGTTGCAATTTGAAGATGCACTAT
TTTAAAGGTCTGATACTGACTGCAATCATTAATGTTAGAGATCATATTTT
GATGGTAACTCTAAACATCAATCAAAGAAAACTGTAGTATGCAATATTCA
AACTTAATTTAGCTGGCCATCAATAAACCCTAAGAAAAATCAATTTTTTG
AAAGAGATAATTATTTCCAGAACACCTAGAAAAACTTCTTTTGGAGGTAA
GTGAAGTAAACAAAAATTTTTCTCGAAAACACATTTAATATCCCCTTGTT
CCCTGAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p19.g1 MSMg01no363_p19.g1 CHROMAT_FILE:
MSMg01no363_p19.g1 PHD_FILE: MSMg01no363_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:54 2005
         (500 letters)



>mm_chr4_79664129_79665028
          Length = 900

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 48  ttaaataggaaggcacaccctaaacgcagtgccactatttcttcaggtgaaatctagaat 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ttaaataggaaggcacaccctaaacgcagtgccactatttcttcaggtgaaatctagaat 841

                                                                       
Query: 108 ggcataaaaacaaagattaactgagcactaacattagtctgacatgacttctttgccagg 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ggcataaaaacaaagattaactgagcactaacattagtctgacatgacttctttgccagg 781

                                                                       
Query: 168 aatgactataacctgaaagggtgaaccaaaataaactccttttcataacccctttgctta 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aatgactataacctgaaagggtgaaccaaaataaactccttttcataacccctttgctta 721

                                                                       
Query: 228 gagtattttatcagagtaaccacacaaataactgatacttacttttcatatttaatcctt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagtattttatcagagtaaccacacaaataactgatacttacttttcatatttaatcctt 661

                                                                       
Query: 288 tgaaagaattttgtaggggtttagcaagagataatacagatatttttatttgggtctttc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgaaagaattttgtaggggtttagcaagagataatacagatatttttatttgggtctttc 601

                                                                       
Query: 348 aatatatttttatctcattcattttactgtgttttgagcaattctgtcagctagttgcaa 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aatatatttttatctcattcattttactgtgttttgagcaattctgtcagctagttgcaa 541

                                                                       
Query: 408 tttgaagatgcactattttaaaggtctgatactgactgcaatcattaatgttagagatca 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tttgaagatgcactattttaaaggtctgatactgactgcaatcattaatgttagagatca 481

                                            
Query: 468 tattttgatggtaactctaaacatcaatcaaag 500
           |||||||||||||||| ||||||||||||||||
Sbjct: 480 tattttgatggtaactataaacatcaatcaaag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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