BAC Information

Click to search

BAC

Clone NameMSMg01-364P10
Chromosome4 (Build37)
Map Location 28,458,203 - 28,458,556
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
Downstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364P10.T7 (MSMg01no364_p10.b1)MSMg01-364P10.TJ (MSMg01no364_p10.g1)
ACCAG473034AG473035
length7871,538
length of high quality
(start - end)
358 (47 - 404)---
definitionCHROMAT_FILE: MSMg01no364_p10.b1 PHD_FILE: MSMg01no364_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:18 2005CHROMAT_FILE: MSMg01no364_p10.g1 PHD_FILE: MSMg01no364_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAACACTATCTTTAGACCAATAAAGTGTTTTGCCACACTATAG
ACTTCCTCCAATGTTGAACACAATTGCTTTTTAGTCTGTGCTGACACTGC
TGTGAATACTAGGAGCTCTACATTATTTTATCTTACTTCAGTCTTAGAGT
AGCCATGTGTACCTGGGTACTAGTGTTTGGCTTTAAGAGTATCGATATAC
CACTTTCTAGAAGTGTTCAACTTGTCCTTGTATATGTGTTTGGTATAATC
TTGGAAATTTTCTACATAGCTATAACAGTGAGGAATCTCTCTGGTAAATA
TATAAAATGAAAGACAATATTTATCTATCTTCAGTACTTAAAATTAGTGA
TCCATCAGGAAGAGGTATGCTAGCGATGGGGTAAGCATCCTATCTATCTA
CTGCGTAAACTTGTCTCTCCTCTTACCACTTGTTGAAAGGAGCTATTGTC
CTTTAAATTAGCTTCCGGCTTTGTGCCTTAGATAGGAGACTCCACAGCCT
CTCTAGTGTTTACATACCAGCTGACGATCTCCTGCATGCAATCCTCCTGT
TATCCCCTTCCGTCCCTCTTTTTGTCTCCCAGTTTCTCCCCCTTCATATT
TTTCCTTGTCTGTCTTGTTCCCCTTCCTGTTTACTTCTCTCTGTTTTCTT
CTTTCTGCCCTTCGTTTAATTTATTTTCCTTCTTAATTTCCTCTGTACCC
TCTCTCCTCCTTTCCCCTCTTTTGTCTTCAATTTCTN
NGTGTGTGGCTNCGATNTATTTGATGATGAGAAGTGAGGGGAGGAGAGAA
ATATCTAAATATAAATAATAGAGGAAAGATAAAAGGAAGAGGAGCGATAC
TAGGGCGTAAATCAAAGTAATAAGTATGTGAGGTATAATATCCAAGTTAA
GAATAAAGGGCGTATAGGGATACACTCGATCTGCCCCTTACACACGGTAT
ATATCGTGGAGTGAAGAGGCGAAGCCACTTCCACCGAGAACAGGATACAA
TATATCAACGTTGCTGCTGGGCCTTGCTGACGGCGCTGGGTGTGGCGGTG
GACGTTAGGTGCGGGCGGTAGAGGGCAGAGTAGGTCAGCGCTCAGGGNTG
TGTGTGTGAGGAGGCGCTCACGGGGTGGGCTGCTCGGAGGTTGTAGGGCG
TGGTATGAGTGAATTGGCTTGCGCACTCGTACGACATTAGTTGTGCTGGC
TCTCCGCTGGGTTCCTTATTGTGATTAGCTTCCTCTGCTGCCACCCGCAC
GCCACGCATGTGATAATGTACACCAACTAACATTACTACTCTATAGACGT
GACGACACTCATCAGATGATATGATCACATATGAAAGATCAGACATCACG
CAGAATGAACTACGAATACAATCACCGCTACAAATGGATAGAATGCTGTT
ATTAGATAACTACCTAGAAGCGATATAAGGTTGGCTAGGGTGTAGCGGGA
GTCTGCTGTGGATGTGGTGTAGTCTATGCTACGATTCGCGCACGNCCGAC
TCTCCCTCGTTGCTGATATGAGGCTATATTACGCGCTGACGACACTAAGA
CGCGGAGCACGAGAGACACCGACATACTATAGAGACTGGCGTAGGGGATG
ATTCGGGAGTGGGTAGTGTGTGTGTGTATTAACATTTCTAGAACTGTCGG
CCACGCTATAGACAGTGACCGTCACCGCGCTCTTATGAGTACTGTCACGA
TGCTATTCAACTCTATATCACGCGATTATTAGCTATGATCTATGGATGGT
GTATGAGGGACAGCGAGTATGACGTAAACGTCAGCCAGCATTAACGGTAT
AATGAAGATANTGGACGCTCGGCGTGATATGAAGAATACTCTCATCCATG
AATCGAGNTGTGAATGTAAGGTCTTTGATATATCGCCTGCTGGATAGCGA
CTCGTGAGTAGATGAGAGATCGGGATATCGTGATATGCATCGTATGTGAT
GGAGAAGAAGGGATAGAACACGGAATGAAGTAATCACGATCGATGTACAC
GCAGATCGCAGAGAGAAGACGGTATACAGACGGGCAGACGTAAGCTGCTG
CACTATATACGCATGTTTGTACTCTTCTCGCGGCTATGGGTAGTGACGCG
GTGTATGCGCTGCTGTCTTCACATGATCGGTCGAGTCACGCGCTAGGCTC
TATGTTCACGGGTATGTACATGTAGTGTACGCAGTGTGGTATAGAGAGAT
AGAGATGATACGTCTGTATGGGNTATGCTACGTGAGACGTAGTGATAGAT
GTACTAACCAATCTCGAGAGACTAGAGTGACGTGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_p10.b1 MSMg01no364_p10.b1 CHROMAT_FILE:
MSMg01no364_p10.b1 PHD_FILE: MSMg01no364_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:18 2005
         (358 letters)



>mm_chr4_28457999_28458756
          Length = 758

 Score =  630 bits (326), Expect = 0.0
 Identities = 347/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaacactatctttagaccaataaagtgttttgccacactatagacttcctcca 64
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 205 gaattctaaacactatctttagaccaataaagtgatttgccacactatagacgtcctcca 264

                                                                       
Query: 65  atgttgaacacaattgctttttagtctgtgctgacactgctgtgaatactaggagctcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttgaacacaattgctttttagtctgtgctgacactgctgtgaatactaggagctcta 324

                                                                       
Query: 125 cattattttatcttacttcagtcttagagtagccatgtgtacctgggtactagtgtttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattattttatcttacttcagtcttagagtagccatgtgtacctgggtactagtgtttgg 384

                                                                       
Query: 185 ctttaagagtatcgatataccactttctagaagtgttcaacttgtccttgtatatgtgtt 244
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 ctttcagagtatcgatataccactttctagtagtgttcaacttgtccttgtatatgtgtt 444

                                                                       
Query: 245 tggtataatcttggaaattttctacatagctataacagtgaggaatctctctggtaaata 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tggtataatcttggaaattttctacatagctatatcagtgaggaatctctctggtaaata 504

                                                                 
Query: 305 tataaaatgaaagacaatatttatctatcttcagtacttaaaattagtgatcca 358
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tataaaacgaaagacaatatttatctatcttcagtacttagaattagtgatcca 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)