XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AAATAGACGTAATGATGGGCATTATGTCCACAGGAGAAGTACAGTAGTAA
GAATACTCCTTTCTGCAATGCTGTGACACTATGTAAGTCATTTCAACCCA
GTGTTTAACTCAACTATAGAGAAAAGGAATTGTTTTTTCTAAGCACTATT
TTCTACTCAAGAGTTAGAAATGAAGAAAGTTGAAAACGTTTTTGTTAGAG
AAGATTCTTGTATATTGTATGCAATTGAACCTCTTAGATGTTTTCTTATC
TATAACATAAATATTAAGTCAATATAACAAGTCAATAGTATTTGTTACCA
TATCATTAATAATAGAAATAAAATATAAAAAGTAGGTCCAATAGCCTAAT
TTCCTTTTGTTTCTTAGCAATATCTATATCACTTATTTCTGATGCACTGC
AGAAGCTCATTCACACACTAAACTTGAAGTTATGTTTAAAAATATGATTT
TAATATTCAATTTTTATATGCCTTGTTGATGATTGTATATTTCTGTATGT
TTGTATCCATGTATCTCTCTGTGTATAAACATATATCTATAAGCTAATGA
GTTTAATATGATCTTAGATATGTGATTGCTCCACAGAAAGAGAAATTGGA
TTATGTTTGAACAATTAATGACACACTAAACTAACCTGAAAGAAGTTCAG
CATAATAGCCATTCCAATCGTAATAATGTGACCGACTATTATGTACACGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCTGTCAAAAGGAAATGCAGGGAGAAAGAGTAGAACAGAGGTT
GAAAGAAAGGTCATCCAGAGACTGTTCCACCTAGGAATCCATTGCATCTT
CAGACACCAAACCTACACACTATTGCTGATGCTACAACATACTTTTTTTT
TTTAATGGATCTTCTTTTTTTTTAAATTAGGTATTTTCTTCATTTACATT
TTCAATGCTATCCCCAAAGTCCCCACACCCTCCCTCCCCACTCCCCCACC
TACCCACTCCCACTTCTTGGCCCTGGTGTCCCCCTGTACTCAGGCATATA
AAGTTTGCACAACCAATGGGCCTCTCTTTCCACTGATGGACGACTAGGCC
ATCTTCTGATACATATGCAGCTAGAGCAACATACTTTTAATAAGGGTTTT
CAAACACTTCAGTCCCACAATGCTTTTAACCCCCCATCCAAAGGTAGAGA
AGAAAAGATGATGAATAGGACAAGGGGATGTGGATCTGTTTGAAAGTAGT
TCTTTGGGGGACAATGCCAATCTCCGTTTGTCAGGATACCAGCAGTTCAG
TTTAGTAGTGTCAGGGTTATCAAACTTAATCCATATCATTGAATGTATGC
TTTAACCATGACATTCTTTGTCTTTAATTCTGTTTAGCAGCATAATCCGC
TGATTAAGTTTATTCTCTTAAACTACCAACCCG

Query= MSMg01no365_b11.b1 MSMg01no365_b11.b1 CHROMAT_FILE:
MSMg01no365_b11.b1 PHD_FILE: MSMg01no365_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:30 2005
         (554 letters)



>mm_chr4_26761328_26762281
          Length = 954

 Score = 1019 bits (527), Expect = 0.0
 Identities = 548/555 (98%), Gaps = 1/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgggcattatgtccacaggagaagtacagtagtaagaatactcctttctgcaatgc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgatgggcgttatgtccacaggagaagtacagtagtaagaatactcctttctgcaatgc 563

                                                                       
Query: 61  tgtgacactatgtaagtcatttcaacccagtgtttaactcaactatagagaaaaggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgacactatgtaagtcatttcaacccagtgtttaactcaactatagagaaaaggaatt 503

                                                                       
Query: 121 gttttttctaagcactattttctactcaagagttagaaatgaagaaagttgaaaacgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gttttttctaagcactattttctactcaagagttagaaatgaagaaagttgaaaacgttt 443

                                                                       
Query: 181 ttgttagagaagattcttgtatattgtatgcaattgaacctcttagatgttttcttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgttagagaagattcttgtatattgtatgcaattgaacctcttagatgttttcttatct 383

                                                                       
Query: 241 ataacataaatattaagtcaatataacaagtcaatagtatttgttaccatatcattaata 300
           |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataatataaataaaaagtcaatataacaagtcaatagtatttgttaccatatcattaata 323

                                                                       
Query: 301 atagaaataaaatataaaaagtaggtccaatagcctaatttccttttgtttcttagcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atagaaataaaatataaaaagtaggtccaatagcctaatttccttttgtttcttagcaat 263

                                                                       
Query: 361 atctatatcacttatttctgatgcactgcagaagctcattcacacactaaacttgaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atctatatcacttatttctgatgcactgcagaagctcattcacacactaaacttgaagtt 203

                                                                       
Query: 421 atgtttaaaaatatgattttaatattcaa-tttttatatgccttgttgatgattgtatat 479
           || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 202 atttttaaaaatatgattttaatattcaattttttatatgccatgttgatgattgtatat 143

                                                                       
Query: 480 ttctgtatgtttgtatccatgtatctctctgtgtataaacatatatctataagctaatga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttctgtatgtttgtatccatgtatctctctgtgtataaacatatatctataagctaatga 83

                          
Query: 540 gtttaatatgatctt 554
           |||||||||||||||
Sbjct: 82  gtttaatatgatctt 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)