BAC Information

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BAC

Clone NameMSMg01-365D14
Chromosome4 (Build37)
Map Location 93,616,733 - 93,617,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D14.T7 (MSMg01no365_d14.b1)MSMg01-365D14.TJ (MSMg01no365_d14.g1)
ACCAG473232AG473233
length760741
length of high quality
(start - end)		540 (40 - 579)579 (59 - 637)
definitionCHROMAT_FILE: MSMg01no365_d14.b1 PHD_FILE: MSMg01no365_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:40 2005CHROMAT_FILE: MSMg01no365_d14.g1 PHD_FILE: MSMg01no365_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTATTTCATTAAGCTTCTTAGTCTATGATTTTTTCATCTTTAAAATAATT
ATTTTCATATTATAAATCACAGTATCTTTTATAAATTTGTTTTATGACTT
TCATATGAGGATAAACTATTGCAATATTCATTCAATAACACATAGATGGA
ACTGATCATGATAGATTATGTGAGCAACCTAACTAAGCTTTAAATCAGCA
TTTAGAAATTTTGATTAGAATATTGAAAAGACCTGTAAGGGAAAAAAAGT
GCCTGTAACAAAATATTATGAGAGGAAAAAAACTCCAAGATGCCATTGAG
TTCATTTTGTATAGGAAATCTACTGCCTGTCATGGGACATGCTCTTAAGA
GTGGTTTGGGTCCTAATGAGATTTTCCTGGAGAAAACTAATTCCTCATTT
AGGAGTGGTTATCAATTGGACATAGCTTCTGGGTTAGGGATGAGGTCATA
TATCTACTTCTCTTCTTAACACTAGGACCCCATCTGGAGAAGACCCATGC
AGGTCATATGTATATCAAATATTTTTATCAACAACAAAATTCTATTATTT
GACAATGGCAGTCTGGTGAAAGTAACCAGAGTATACCATGAGCACGTTTT
TATTGCTTATTCCAGTCAAATACCTTGTTTGCATGCCGCGATTAAAAACC
TCCCTTTTTTTTTACTATTTAAACGGTTAACAATTACTCCCCTCGTGGCT
TATATTTACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCT
TTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCT
ATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAAC
TTTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGTG
GTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGA
AGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAA
CTAAGTATACAGGCCTTTCCAAGGGTCTTGAACCTGAGGAAAAGTTTAGG
TCAGGTAAGAATACCTGGGGAGAGATTAGAAAGAAAGAAAAGAAAAAAGA
TCAATCAGCGGAGGTCTCTAGGAGAAGGAGACTATACTCATCACTAGGTG
AGCTCAAGGAGCCAGTTCTTAATAGTTCTGAATCAGATGAAAAGGCTATT
AGGGCCTGGAAGGCGCTCTCCAGAGCAGGTGAAGCCACTGGACAACTAAC
AAAGATCGTCCAGGGACCTCAGGAGTCCTTCTCAGATTTTGTGGCCAGAA
TGACAGAGGCAGCAGAGAGTATTTTTTGGAGATTTGGAGCAAGCCGCACC
TCTGGTATAATAGTTTATTTATTGAGCAGCCACGCAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d14.b1 MSMg01no365_d14.b1 CHROMAT_FILE:
MSMg01no365_d14.b1 PHD_FILE: MSMg01no365_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
         (540 letters)



>mm_chr4_93616733_93617678
          Length = 946

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/502 (98%), Gaps = 8/502 (1%)
 Strand = Plus / Minus

                                                                       
Query: 19  attaagcttcttagtctatgattttttcatctttaaaataattattttcatattataaat 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attaagcttcttagtctatgattttttcatctttaaaataattattttcatattataaat 443

                                                                       
Query: 79  cacagtatcttttataaatttgttttatgactttcatatgaggataaactattgcaatat 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacagtatcttttataaatttgttttatgactttcatatgaggataaactattgcaatat 383

                                                                       
Query: 139 tcattcaataacacatagatg------gaactgatcatgatagattatgtgagcaaccta 192
           |||||||||||||||||||||      |||||||||||||||||||||||||||||||||
Sbjct: 382 tcattcaataacacatagatggaagttgaactgatcatgatagattatgtgagcaaccta 323

                                                                       
Query: 193 actaagctttaaatcagcatttagaaattttgattagaatattgaaaagacctgtaagg- 251
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 322 actaagctttaactcagcatttagaaattttgattagaatattgaaaagacctgtaagga 263

                                                                       
Query: 252 -gaaaaaaagtgcctgtaacaaaatattatgagaggaaaaaaactccaagatgccattga 310
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaaaaaaagtgcctgtaacaaaatattatgagaggaaaaaaactccaagatgccattga 203

                                                                       
Query: 311 gttcattttgtataggaaatctactgcctgtcatgggacatgctcttaagagtggtttgg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gttcattttgtataggaaatctactgcctgtcatgggacatgctcttaagagtggtttgg 143

                                                                       
Query: 371 gtcctaatgagattttcctggagaaaactaattcctcatttaggagtggttatcaattgg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gtcctaatgagattttcctggagaaaactaattcctcatttaggagtggttatcaattgg 83

                                                                       
Query: 431 acatagcttctgggttagggatgaggtcatatatctacttctcttcttaacactaggacc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  acatagcttctgggttagggatgaggtcatatatctacttctcttcttaacactaggacc 23

                                 
Query: 491 ccatctggagaagacccatgca 512
           ||||||||||||||||||||||
Sbjct: 22  ccatctggagaagacccatgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 946
Length adjustment: 10
Effective length of query: 530
Effective length of database: 936
Effective search space:   496080
Effective search space used:   496080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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