BAC Information

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BAC

Clone NameMSMg01-365L16
Chromosome4 (Build37)
Map Location 116,033,461 - 116,033,949
singlet/doubletsinglet
Overlap geneMast2
Upstream geneLOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L16.T7 (MSMg01no365_l16.b1)MSMg01-365L16.TJ (MSMg01no365_l16.g1)
ACCAG473615AG473616
length776748
length of high quality
(start - end)		383 (41 - 423)493 (56 - 548)
definitionCHROMAT_FILE: MSMg01no365_l16.b1 PHD_FILE: MSMg01no365_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:18 2005CHROMAT_FILE: MSMg01no365_l16.g1 PHD_FILE: MSMg01no365_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCCTTGTCTTTTCTTTCTCTTTCTTTTCTTTTTTCTTTTTTCCCCACTT
GGACACAACTGGTATTGTAAGATAGTAGCTGTTCCAATTGGAGGATAGTA
CTGTACAACATGTTTGATGTTTCGTCCCCAGACAATGGTGCTGTTTTCAG
AGGCTGTAGAACCTTTGGGACTTGAGGTCTTCAAAGAAGTAGAGCACTAG
GGGCAGGCCTAGAAGGCTGTTTTGGTCTGTGTTCTCTGCTTCTTGATTTA
CCAACATATGATATTTCTTTGTCACATGTTCCTACCACCACAGGGGCCTT
CTTCCATGCCTTTCTCACCTCTACAACTGTGGGCCAAAATAAACGCCTTC
TTCCTTAATGGTTCTGTTCCAGAGATGCAGCAGCGATTAATACCACATCT
TTGAGAGTGGGAATTTCTTTTTGGTTGTCTGTTCCATCATTTTGGTTTAA
TATTAGCAATGTTTTTGTATCATTACACGACATCTTCTTGCTGTTATATA
CGCGTTCTTGCGTTTAATAATTATTGTTTGACCTTTCTTATATCCCTGAT
TTTCCTCCCCGTACCTTATGGTTTTTTTTTTTTACCCTTTTCTTGCCTTT
CCCCTTTCTTTCTTGCTATTTTCTCTTTTTTTCTTCGCCCCCTTTTTTAT
ACCCTTTCTTATTCTTTTTTCCCTTTTTTCCCCCTTTTCCTCCTCTTCCT
TCTTTAATTTTCCTGCCTTTTATCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGTCCTCCCCTTCCTTAATAATGCAGTTTAGAAGCTAACAGAT
ACTTATGAAGCGTTAGTGGATGAGAGTAGGTGGTAAGGTACTTGCCATAA
GTTGACAGACATGTTTTGAGATGTTATCTGCTTAGAGAAAATACTGTTGG
TGTGTCATGAGGTGCTGGGCAACCAGCAAAGTTTTTGTAGCCACACATGG
TCAGTGGGTACAAAAGATTAGTTGTAAACTAAAAAAAGTTAGATTAAATA
ACAATATTGAGGATAATTAGAGTCAGGATTCTCATTAGCAAAAAAAAGGA
ATCACAAAAACAGAAATCACTAATAGAGAAAATTGGAAAGAACTAGAATT
AAAAGCAGTGGTAGCAAGTAAGCCAAGAGTTTTAAGATATGCACATATTA
CCTAAAAACAGTATACACAGTATAGCAACTTCTTTTAAATAACATTCCCC
ACTCACAAAAAATATGCATTCTCCAGAATGCCTAAATCAAGGGCTAATGA
TGGGAAGGTAAAAGGACCACATAGGACTACTTTATTGAAACCACAAAGTA
AGTTTTCCCAAGAAAGACCTATATATCCTTCCTCCAAAAGACCTAAAACC
CACCTGAAAAAACTCCTTCTGGACCCAAAAAATAACTTTCTTTCCCCCGC
CCCTATTAGGTTTTTAAAAGATTTCTGGGTCTCGCAAAACTGGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l16.g1 MSMg01no365_l16.g1 CHROMAT_FILE:
MSMg01no365_l16.g1 PHD_FILE: MSMg01no365_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:18 2005
         (493 letters)



>mm_chr4_116033257_116034149
          Length = 893

 Score =  893 bits (462), Expect = 0.0
 Identities = 483/490 (98%), Gaps = 2/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   tcctccccttccttaataatgcagtttagaagctaacagatacttatgaagcgttagtgg 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 tcctccccttccttaataatgcagtttagaagctagcagatacttatgaagcgttagtgg 264

                                                                       
Query: 65  atgagagtaggtggtaaggtacttgccataagttgacagacatgttttgagatgttatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgagagtaggtggtaaggtacttgccataagttgacagacatgttttgagatgttatct 324

                                                                       
Query: 125 gcttagagaaaatactgttggtgtgtcatgaggtgctgggcaaccagcaaagtttttgta 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttagagaaaacactgttggtgtgtcatgaggtgctgggcaaccagcaaagtttttgta 384

                                                                       
Query: 185 gccacacatggtcagtgggtacaaaagattagttgtaaactaaaaaaagttagattaaat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 gccacacatggtcagtgggtacaaaagattagttgtaaactaaaaaaagttagattaagt 444

                                                                       
Query: 245 aacaatattgaggataattagagtcaggattctcattagcaaaaaaaaggaatcacaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaatattgaggataattagagtcaggattctcattagcaaaaaaaaggaatcacaaaa 504

                                                                       
Query: 305 acagaaatcactaatagagaaaattggaa-agaactagaattaaaagcagtggtagcaag 363
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 505 acagaaatcactaatagagaaaattggaaca-aactagaattaaaagcagtggtagcaag 563

                                                                       
Query: 364 taagccaagagttttaagatatgcacatattacctaaaaacagtatacacagtatagcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taagccaagagttttaagatatgcacatattacctaaaaacagtatacacagtatagcaa 623

                                                                       
Query: 424 cttcttttaaataacattccccactcacaaaaaatatgcattctccagaatgcctaaatc 483
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 cttcttttaaaaaacattccccactcacaaaaaatatgaattctccagaatgcctaaatc 683

                     
Query: 484 aagggctaat 493
           ||||||||||
Sbjct: 684 aagggctaat 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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