Query= MSMg01no366_c06.b1 MSMg01no366_c06.b1 CHROMAT_FILE:
MSMg01no366_c06.b1 PHD_FILE: MSMg01no366_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:53 2005
(475 letters)
>mm_chr4_57578120_57578994
Length = 875
Score = 584 bits (302), Expect = e-171
Identities = 327/342 (95%), Gaps = 12/342 (3%)
Strand = Plus / Minus
Query: 138 ttgggtggctcagtagttaagagaagtggtagctcttcaagggtggggaagcatatccaa 197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 875 ttgggtggctcagtagttaagagaagtggtagctcttcaagggtgggggagcatatccaa 816
Query: 198 ttccaagcacccacatggcagctcacacctctctgagactccagtcccagggaatctgat 257
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttccaagcacccacgtggcagctcacacctctctgagactccagtcccagggaatctgac 756
Query: 258 gccctcttctggcctctgtgagcactgcacacatatggtgtccagacatatatgaagaca 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gccctcttctggcctctgtgagcactgcacacatatggtgtccagacatatatgaagaca 696
Query: 318 aatataa----tttaaaaaaaaaaaaaatggaccctaagcaaccatctgcatgaggattt 373
||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aatataattttttt--------aaaaaatggaccctaagcaaccatctgcatgaggattt 644
Query: 374 catgaccacatgcacagaattaaatttctatatggcaagctgagaactacagatggactt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 catgaccacatgcacagaattaaatttctatatggcaagctgagaactacagatggactt 584
Query: 434 agagtcatttcattaatgaaatttacaggaccaaagactcat 475
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agagtcatttcattaatgaaatttacaggaccaaagactcat 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_c06.g1 MSMg01no366_c06.g1 CHROMAT_FILE:
MSMg01no366_c06.g1 PHD_FILE: MSMg01no366_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:53 2005
(428 letters)
>mm_chr4_57428305_57429132
Length = 828
Score = 721 bits (373), Expect = 0.0
Identities = 416/435 (95%), Gaps = 11/435 (2%)
Strand = Plus / Plus
Query: 1 tcttccagaggtcctgagttcaattctcagcaatcacattgtggctcacatccatctgta 60
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 198 tcttccagaggtcctgagttcgattcccagcaatcacattgtggctcacatccatctgta 257
Query: 61 atgggatctgatgtccttttctggtgtgactgaagatagtgatagtgtactcacatatac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgggatctgatgtccttttctggtgtgactgaagatagtgatagtgtactcacatatat 317
Query: 121 agaataaatagataaatcttttcaaaaaa-----agagaagagcatcagatggcattctg 175
||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 318 agaataaatagataaatcttt--aaaaaaaaaagagagaagagcatcagatggcattcgg 375
Query: 176 atagaaaacaccttcacactgttttctaataggtagtagccatcttggttagaaaattat 235
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 atagaaaacaccttcacactgttttctaatgggtagtagccatcttggttagaaaattat 435
Query: 236 tcttatgaactttg--ttccatgacaatcaaataataaactaaccattcagtcacccatt 293
|||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 436 tcttatgaactttgcat--catgacaatcaaatactaaactaaccattcaatcacccatt 493
Query: 294 catatggataacatgcaacttttctttggaaatttaaatttcttgcaatatccacctggc 353
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catatggacaacatgcaacttttctttggaaatttaaatttcttgcaatatccacctggc 553
Query: 354 taatttctcttagcatttggaacatgaggcctaaggctcttcatacacatttatgaacat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taatttctcttagcatttggaacatgaggcctaaggctcttcatacacatttatgaacat 613
Query: 414 tagaattttggttct 428
|||||||||||||||
Sbjct: 614 tagaattttggttct 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
