NGTTTGATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTAGCTATCCTAACTTACTCCTAGTGGGAGAAGAGA
GTACCCAGACTGTGAACCCAGAGTAGTCAGGCTTCACTGCTATGCTCTTC
TCAGCAAGGTCAGATGTGGAGGCAGAAGGCATCTTGCCTTTCCAGTACCC
AGAGGAGGTATTTCCAACATCTGAAGGAGAGAAGTAGAGCCACTAGTTCA
TGAGGGAGGGAGGGAGGATGTGGCAATGAGAAAGACAATCTAGTTTATAT
ACTGGTGGAGAGTGATTTATCACTAAGCCCAGATTTCTAGATTAACTCTG
AGGGCAGAAGTAACAGCAGTTCATAGTCTCTGCTCAAGCTTTCAGTGTGT
TCCATCCAAAACTTGGTTAAACATGGCTTGGAACTCACGCAATAATGCAC
TTCTTTCTGGATCTCACAGTAAGGCTAACCATTCAAAGAGGAGAAAAAGG
AGGTAAAAAAAAAATAAGGAAGAGTTGGTCGGAGTTGTTCCTTTACTCCC
AACATGTTGAGAAACAGAATGACACCTTATAAGACCCCTTCCCAATGGCA
TGCCTCTCTTTTTGCAGTGTTCAGTGGGCATAGGATTACTGACTTCAGGA
TTCCGTAAATTTCATGTGCATGGCTTGCAGAGGAATGAACCTTAAATGCT
TGCCCCTTTATGGCTTCAGTCTGGATGGTTATTACCGGACTTCCCTTGTT

NNNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACT
TTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAA
CGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTA
CATTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAA
CCTACTTGGTCAGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTT
AGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTG
GTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGA
GTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTAT
CTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCT
GATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGG
AGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAG
AAGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAA
ATTTGTCCATTTCGTCCAGGTTTTTCCGTTTTTGTGAAGAAAACCCTTTT
TGAAAAGTACTGAATGGTGTTTGGATTTCTTCCGACCTGG

Query= MSMg01no366_i06.b1 MSMg01no366_i06.b1 CHROMAT_FILE:
MSMg01no366_i06.b1 PHD_FILE: MSMg01no366_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:23 2005
         (540 letters)



>mm_chr4_76097408_76098346
          Length = 939

 Score = 1019 bits (527), Expect = 0.0
 Identities = 533/535 (99%), Gaps = 1/535 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtagctatcctaacttactcctagtgggagaagagagtacccagactgtgaac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaattctgtagctagcctaacttactcctagtgggagaagagagtacccagactgtgaac 679

                                                                       
Query: 65  ccagagtagtcaggcttcactgctatgctcttctcagcaaggtcagatgtggaggcagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccagagtagtcaggcttcactgctatgctcttctcagcaaggtcagatgtggaggcagaa 619

                                                                       
Query: 125 ggcatcttgcctttccagtacccagaggaggtatttccaacatctgaaggagagaagtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggcatcttgcctttccagtacccagaggaggtatttccaacatctgaaggagagaagtag 559

                                                                       
Query: 185 agccactagttcatgagggagggagggaggatgtggcaatgagaaagacaatctagttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agccactagttcatgagggagggagggaggatgtggcaatgagaaagacaatctagttta 499

                                                                       
Query: 245 tatactggtggagagtgatttatcactaagcccagatttctagattaactctgagggcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tatactggtggagagtgatttatcactaagcccagatttctagattaactctgagggcag 439

                                                                       
Query: 305 aagtaacagcagttcatagtctctgctcaagctttcagtgtgttccatccaaaacttggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagtaacagcagttcatagtctctgctcaagctttcagtgtgttccatccaaaacttggt 379

                                                                       
Query: 365 taaacatggcttggaactcacgcaataatgcacttctttctggatctcacagtaaggcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaacatggcttggaactcacgcaataatgcacttctttctggatctcacagtaaggcta 319

                                                                       
Query: 425 accattcaaagaggagaaaaaggaggtaaaaaaaaaataaggaagagttggtcggagttg 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 accattcaaagaggagaaaaaggaggt-aaaaaaaaataaggaagagttggtcggagttg 260

                                                                  
Query: 485 ttcctttactcccaacatgttgagaaacagaatgacaccttataagaccccttcc 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcctttactcccaacatgttgagaaacagaatgacaccttataagaccccttcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space:   492370
Effective search space used:   492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)