Query= MSMg01no366_i11.b1 MSMg01no366_i11.b1 CHROMAT_FILE:
MSMg01no366_i11.b1 PHD_FILE: MSMg01no366_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:24 2005
(513 letters)
>mm_chr4_120688427_120689339
Length = 913
Score = 888 bits (459), Expect = 0.0
Identities = 498/511 (97%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttgctttcc-tttctccctgcttgaacgggtcctgcactacagtccaggtct 62
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgc-ttccttttctccctgcttgaacgggtcctgcactacagtccaggtct 262
Query: 63 gctagtttcgctcaccacacacgcatgaggcctccacaacccaggctagactacctagaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctagtttcgctcaccacacacgcatgaggcctccacaacccaggctagactacctagaa 322
Query: 123 atccgcactttgtcactgcataaggtagctgcttctcagtgcacacgacctgggtgaaga 182
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 atccgcactgtgtcactgcataaggtagctgtttctcagtgcacacgacctgggtgaaga 382
Query: 183 aagccacctaagcactcggtctgagctcaacaacgtggtaaaatgacaggagccgctaac 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 383 aagccacctaagcactcggtctgagctcaacaaggtggtaaaatgacaggagctgctaac 442
Query: 243 gacatagcagacagcaaggaatgccacctttatttattatttcgacagtttttctcttcg 302
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 443 gacatagcagacagcaaggaatgccacctttaaatatcatttcgacagtttttctcttag 502
Query: 303 tcatctcaccttcctcctcgccacccccaccgccacccccaccacactgcagctcaccca 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcatctcaccttcctcctcgtcacccccaccgccacccccaccacactgcagctcaccca 562
Query: 363 cagctttgccaagtgaaaggctgccagctctgcatgacagcgagcccagaagccattcag 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cagctttgccaagtaaaaggctgccagctctgcatgacagcgagcccagaagccattcag 622
Query: 423 agtctgcaacatagacagtctcacctgaacacaccgggcaaccccaccccccactatacc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 623 agtctgcaacatagacagtctcacctgaacacaccgggcaaccccaccccccactatatc 682
Query: 483 atccccacttcgctgacacacacacacacac 513
|||||||||||||||||||||||||||||||
Sbjct: 683 atccccacttcgctgacacacacacacacac 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_i11.g1 MSMg01no366_i11.g1 CHROMAT_FILE:
MSMg01no366_i11.g1 PHD_FILE: MSMg01no366_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:24 2005
(466 letters)
>mm_chr4_120862329_120863194
Length = 866
Score = 862 bits (446), Expect = 0.0
Identities = 461/466 (98%)
Strand = Plus / Minus
Query: 1 tttgaccaaggcctaaaaagacagtgtgtacacgtgtgttaggaaaagaggaatgaatag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 666 tttgaccaaggcctaaaaagacagtgtgtacacatgtgttaggaaaagaggaatgaatag 607
Query: 61 tacatttgagagtgaagagccaatttgtttcctttttatttgtaaaatgatgaaatatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tacatttgagagtgaagagccaatttgtttcctttttatttgtaaaatgatgaaatatgt 547
Query: 121 ttgttttttagaccttattgcaatatgcaagcaacaagaatgcatcagaacacattgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgttttttagaccttattgcaatatgcaagcaacaagaatgcatcagaacacattgtgt 487
Query: 181 atcttctggaggtataccgcctcgctatccaaagctttgccagcgcacgtccatttctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atcttctggaggtataccgcctcgctatccaaagctttgccagcgcacgtccatttctaa 427
Query: 241 ctactgtttgtgaagatgttctcttagtgcttggcagattagtcctgtaagtttaagctc 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctactgaatgtgaagatgttctcttagtgcttggcagattagtcctgtaagtttaagctc 367
Query: 301 ttaaagtacttaagaattgagtactgttgattgtgatgctcgcctgacttctttacagtg 360
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 366 ttaaagtacttaagaattgagtactgttgattgtgatgtttgcctgacttctttacagtg 307
Query: 361 ccactgtttattctgcaaagcaccaattccctctactctcaaccttcattaagttcccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccactgtttattctgcaaagcaccaattccctctactctcaaccttcattaagttcccaa 247
Query: 421 gaggtaaagtccaagtgaggcaccagctaaacaaaatctaccttta 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaggtaaagtccaagtgaggcaccagctaaacaaaatctaccttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
