BAC Information

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BAC

Clone NameMSMg01-367A21
Chromosome4 (Build37)
Map Location 28,136,654 - 28,136,986
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842
Downstream geneLOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367A21.T7 (MSMg01no367_a21.b1)MSMg01-367A21.TJ (MSMg01no367_a21.g1)
ACCAG474618AG474619
length766779
length of high quality
(start - end)		496 (36 - 531)455 (75 - 529)
definitionCHROMAT_FILE: MSMg01no367_a21.b1 PHD_FILE: MSMg01no367_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:06 2005CHROMAT_FILE: MSMg01no367_a21.g1 PHD_FILE: MSMg01no367_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGG
GAGACATCTCTTATTCAAAACACAGCACTAATCAAGGAGCTAAAACACTT
CTACAACAAAGGCTTTAAAATTCTGTGGAAAGAAATCAAGCAATATACCA
GAAAGTGGAAACAAACCAAAAAAAAGTTCCAATTAAAGCTCCTTATCATT
GTAAACAGAAATATGGAAACACAAAATATCCTGGGGATCCAGAGTAATCC
TGAGAAAGAAGAACAATGCTGAAGATACCTGCTCTCAGATATCCTATAGA
GTTATAGTAACACTACTACTGCTGCTCCTACCAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATGACAATAACAACAACAGTGT
ATTGGTGCAGCCTTATGTATGTAAAGCAAAGACAAAGACCTCAATGTGAA
ATTGAAGCTATTAGCAAAGAAGGTAGAAACTGCTTTACAGTATACTCATA
GGTAGGGACTTTCTAAATTAGTCTCTAGTCACTGGCAAAATAAAGCTAAC
GAATGACAAATGAGATCTCATGAAATTAAAAATGCTTCTGCACAACAAAA
CTAAATCGCCTGTTGGAGGCGGGCTAATAAACTGGAAAAAATTTTCAGCT
ATACATCTGAAAAGAATTCTATGTAGAATAACTTGAAAACTTCTTTAAAA
CCCAACCGGGAGAAATGAACAATTTACCTGGAAATGAGCCACGACCCGAA
AAAAATTTTTCAAAAA

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCCTAGGCAAATGGATGGA
CCTGGAAGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCAC
ACAATATGTACTGACAATAAATGGATATTTGCCCAGAAACTTAGGATACC
CAAGATATAGGATACAATTTGCTAAACGCATGGAACTCAAGAAGAACAAA
GACCAAAGTGTGGACACTTTGCCCCTTCTTTGAATTGGGAACAAAACACC
CATGAAAGGAGTTATAGAAACAAAGTTTGGAGCTGTGACGCAAGGTTGGA
CCATCTAAAGACTGCCATCTCACGGGATCCATCCCATAATCAGCTTCCAA
ACACTGACACCATTGCATACACAAGCAAGATTTTGCTGAAAGGACCCCAG
ATAGAGCTGTCTCTTGTGAGACTAAGCCGGGGCCTAGCAAACACATAAGT
GGATACTCACAGTCAGCTATTGGATGATCACAGGGCCTCCAATGGAGGAG
CTAGAGAAAGTACCCTAGGAGCTAAAGGGATCTGCCATCCTATAGGTGGG
ACAACAATGGGAAACAACCAGTTACCCCCCAGAGCTCATGTCTCTAGCTG
GATATGAATCCAAGAAGGCCTACCCTCCCTCCCTGGAAAAAAAGACCCTT
TGGTCGGGAACTTTTTTTGTCCCCACCCAGGGATAGGCCCGCCCCCTAAT
GGAATGGTGGGGGGGCGTTGCTCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_a21.b1 MSMg01no367_a21.b1 CHROMAT_FILE:
MSMg01no367_a21.b1 PHD_FILE: MSMg01no367_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:06 2005
         (496 letters)



>mm_chr4_28136095_28136990
          Length = 896

 Score =  441 bits (228), Expect = e-128
 Identities = 322/386 (83%), Gaps = 54/386 (13%)
 Strand = Plus / Minus

                                                                       
Query: 112 accagaaagtggaaacaaaccaa-aaaaaagttccaattaaagctccttatcattgtaaa 170
           |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||
Sbjct: 892 accagaaagtggaaacaaaccaacgaaaaagttccaattaaaactccttatcattgtaaa 833

                                                                       
Query: 171 cagaaatatggaaacacaaaatatcctggggatccagagtaatcctgagaaagaagaaca 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cagaaatatggaaacacaaaatatcctggggatccagagtaatcctgagaaagaagaaca 773

                                                                       
Query: 231 atgctgaagatacctgctctcagatatcctatagagttatagtaacactactactgctgc 290
           |             ||||||||||||||||| ||||| ||||||||||||||||||||| 
Sbjct: 772 a-------------tgctctcagatatcctacagagtcatagtaacactactactgctg- 727

                                                                       
Query: 291 tcctaccaataataataataataataataataataataataataataataataatgacaa 350
             ||| ||| || || || |                                    ||||
Sbjct: 726 --cta-caacaacaacaaca------------------------------------acaa 706

                                                                       
Query: 351 taacaacaacagtgtattggtgcagccttatgtatgtaaagcaaagacaaagacctcaat 410
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 705 caacaacaacagtgtattggtgcagccttatgtatgtaaagcaaagataaagacctcaat 646

                                                                       
Query: 411 gtgaaattgaagctattagcaaagaaggtagaaactgctttacagtatactcataggtag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtgaaattgaagctattagcaaagaaggtagaaactgctttacagtatactcataggtag 586

                                     
Query: 471 ggactttctaaattagtctctagtca 496
           ||||||||||||||||||||||||||
Sbjct: 585 ggactttctaaattagtctctagtca 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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