Query= MSMg01no367_b13.b1 MSMg01no367_b13.b1 CHROMAT_FILE:
MSMg01no367_b13.b1 PHD_FILE: MSMg01no367_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:09 2005
(528 letters)
>mm_chr4_46839864_46840791
Length = 928
Score = 899 bits (465), Expect = 0.0
Identities = 510/525 (97%), Gaps = 2/525 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcttttaccaaaaaaaaaggtacctccacggcttaccccaggtgggttgtaaa 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctttaaaaaaaaaaaaaggtacctccacggcttaccccaggtgggttgtaaa 264
Query: 65 tttaaaagtaagatcattcgtgccaggtgtgaggggcagtggtcactatcagggatatga 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaaagtaagatcattcgcgccaggtgtgaggggcagtggtcactatcagggatatga 324
Query: 125 tcaaagagaggataagacagcat-gcttccggttcagttactgcagggcaagccacagta 183
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 325 tcaaagagaggataagacag-ataacttcgggttcagttactgcagggcaagccacagta 383
Query: 184 atgccattgacctaaacccaagaggtgtggtctctctgcaggaacaagctagcctgcacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 atgccattgacctaaacccaagaggtgtggtctctctgcaggaacaagctaacctgcacc 443
Query: 244 ccatgaaaccccaaagggatgcatagaagcctctggtgggagagatcttttcactactcc 303
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtgaaaccccaaagggatgcgcagaagcctctggtgggagagatcttttcactactcc 503
Query: 304 cgggaaggagcagctgtggcagcttggtaactccccagagagggccagaggcagctgttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgggaaggagcagctgtggcagcttggtaactccccagagagggccagaggcagctgttc 563
Query: 364 acaggctgggcacagcaaattgtgtgatatgctgggttctggggcaggctgccaagccaa 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 acaggctgggcacagcaaattgtgtgatatgctgggttctggggcaggccgccaagccaa 623
Query: 424 cctggggcgcctctgcaccccacccctccaccgcctgctgccttactgctgattcacaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctggggcgcctctgcaccccacccctccaccgcctgctgccttactgctgattcacaag 683
Query: 484 caaggccaggatatgccagaaggatccgaaatggctctccagtga 528
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 caaggccaggatatgccagaaggatccgaaacggctctccagtga 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_b13.g1 MSMg01no367_b13.g1 CHROMAT_FILE:
MSMg01no367_b13.g1 PHD_FILE: MSMg01no367_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:09 2005
(457 letters)
>mm_chr4_47019502_47020358
Length = 857
Score = 806 bits (417), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Minus
Query: 13 tcaggtcccctgattgcgagcactttgccagctaagctgtctctccagccctgctttaag 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tcaggtcccctgattgcgagcactttgccagctaagctgtctctccagccctgctttaag 798
Query: 73 ctgatagttttgctttcacctcctgagtgctgggattacagttgttacctctgggactga 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctgatagttttgctttcacctcctgagtgctgggattacagttgttacctctgggactga 738
Query: 133 ctggtacagtgctggggactgaagacaggattctgtgtagtgaagcaagggctctaccaa 192
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctggtgcagtgctggggactgaagacaggattctgtgtagtgaagcaagggctctaccaa 678
Query: 193 cagagctacatgctagccccagaccggcatattgtagctcaagccgattagcttgggctg 252
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 677 cagagctacatgctagccccagaccggcatattgtagctcaagtcggttagcttgggctg 618
Query: 253 tacctgcctgtggtgctggctccgggccttgtgttctgaagagtttcccaaaggtcccat 312
||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 617 gacctgcctgtggtgctggctccgggtcttgtgttctgaggagtctcccaaaggtcccat 558
Query: 313 ttcccaggctcgcgtcagctgacttctggcctgaggcctcagcaggctctgctgtgcttt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttcccaggctcgcgtcagctgacttctggcctgaggcctcagcaggctctgctgtgcttt 498
Query: 373 tctccagagggaagacaccagtgcctcagggagctctcctgggggtcagggctgtcttaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctccagagggaagacaccagtgcctcagggagctctcctgggggtcagggctgtcttaa 438
Query: 433 gggtgcctgtgggactgcccccctg 457
|||||||||||||||||||||||||
Sbjct: 437 gggtgcctgtgggactgcccccctg 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
