BAC Information

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BAC

Clone NameMSMg01-367C01
Chromosome4 (Build37)
Map Location 85,263,409 - 85,263,772
singlet/doubletsinglet
Overlap geneA930009N24
Upstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C01.T7 (MSMg01no367_c01.b1)MSMg01-367C01.TJ (MSMg01no367_c01.g1)
ACCAG474674AG474675
length717752
length of high quality
(start - end)
369 (4 - 372)428 (80 - 507)
definitionCHROMAT_FILE: MSMg01no367_c01.b1 PHD_FILE: MSMg01no367_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:11 2005CHROMAT_FILE: MSMg01no367_c01.g1 PHD_FILE: MSMg01no367_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCCGCGGAATTCTTTTAAGTGAATTCTTTTTGGTCATAAGGTAGGTC
AGGCAAACAATTATTGTACATTGTGGCCAGGAATGGCGCTTTACTCCTGC
ATACGTACAGATGTCCCACACATATGAAAGGAAGATGCAGGATGGCACAT
AGCGTCCTCAACCTGACAGCTCAGACTCCTACATTGTGGAGAGGTGGGTG
CAATGAGGACCCCGAGTCTTTACTCTTTCATGAATTTTTTTTCCATTTTT
ATTAGGTATTTAGCTAATTTACATTTCCAATGCTATACCAAAAGTCCCCC
ATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTATTTGGCCC
TGGTGTTCCCCTATACTGGGGCATATAAAGTTTGCGTGTCCCATGGTCCT
CTCTTTCCAGAGATGGCCGACTAGGCCATCTTTTGATACATATGTAGCTA
TAGTCTTGAGCTTCAGTGTACTGGCTATTTCATATTGCTGTTTCACCTAT
TCTTTTACAGATCTCCTTTATCTCCTTGTCTACTTTTTCTATTTCTCCCT
TTGTTATTCCTGTGTTTCTTCCCTTATCCTATTTGCCTTTTTCCTTTTCT
TTGTTTTGCTATTGTCTCTTTATACTTCTATACTTACTCCGTTTTTTCTT
GTTCCCCCCTTTTCACCCCTCGCTTTCTTTTTCTACTACTCTTTCCTTTT
TCCTCTTCCTTCTTTTG
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATAAAAACACTTAGAGAC
TCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGG
GCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGGTGAGTGGACCA
CAGTGCCTGCCCCAATCCAATCGCGCTGAACTCGAGACTGCGGTACATAG
GGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTTCCGCTCGA
CTCGAGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACAC
CCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGGTGA
GTGGACCACAGCGCCTGCCCCAATCCAATCGCGCGGAACTTGAGACTGCG
GTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAACCCCTT
CCACTCCACTCGAGTCCTGGGCTACCTTACCAGCTGAGTCTTCTGACTCC
TGTTAGGGCCCTCTCTGGATTCCCCACGTGATCCTAATACCTCTAGTGAG
TGGAACACCATTTCTGTCAGCAGTTCTGGCTTTAACTCCCGATTCCCTGG
TTTACTGCTTTGTCCGAAAATAGTTTGCCCGCATAAAATATTCTGTCCTT
TTGATACCACCGTTTTATGTTTTTTTTTCTTATTTTGCTTTTTAAGTTCT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c01.b1 MSMg01no367_c01.b1 CHROMAT_FILE:
MSMg01no367_c01.b1 PHD_FILE: MSMg01no367_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:11 2005
         (369 letters)



>mm_chr4_85263203_85263972
          Length = 770

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttttaagtgaattctttttggtcataaggtaggtcaggcaaacaattattgtac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttttaagtgaattctttttggtcataaggtaggtcaggcaaacaattattgtac 266

                                                                       
Query: 67  attgtggccaggaatggcg-ctttactcctgcatacgtacagatgtcccacacatatgaa 125
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attgtggccaggaatggcgtctttactcctgcatacgtacagatgtcccacacatatgaa 326

                                                                       
Query: 126 aggaagatgcaggatggcacatagcgtcctcaacctgacagctcagactcctacattgtg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggaagatgcaggatggcacatagcgtcctcaacctgacagctcagactcctacattgtg 386

                                                                       
Query: 186 gagaggtgggtgcaatgaggaccccgagtctttactctttcatgaattttttttccattt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gagaggtgggtgcaatgaggaccccgagtctttactctttcatgaattttttttccattt 446

                                                                       
Query: 246 ttattaggtatttagctaatttacatttccaatgctataccaaaagtcccccatacccac 305
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccac 506

                                                                       
Query: 306 ccacccccactcccctacccacccactccccctatttggccctggtgttcccctatactg 365
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 507 ccacccccactcccctacccccccactccccctatttggccctggcgttcccctatactg 566

               
Query: 366 gggc 369
           ||||
Sbjct: 567 gggc 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 770
Length adjustment: 9
Effective length of query: 360
Effective length of database: 761
Effective search space:   273960
Effective search space used:   273960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)