Query= MSMg01no367_d10.b1 MSMg01no367_d10.b1 CHROMAT_FILE:
MSMg01no367_d10.b1 PHD_FILE: MSMg01no367_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:18 2005
(556 letters)
>mm_chr4_4303898_4304853
Length = 956
Score = 1052 bits (544), Expect = 0.0
Identities = 550/552 (99%)
Strand = Plus / Plus
Query: 5 gaattctcttgtcaaagtcgtgcttctttacctgtggggtctgcttctttagattcaacc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttggcaaagtcgtgcttctttacctgtggggtctgcttctttagattcaacc 264
Query: 65 aaattcagacagaaaataccaataaagaactggatgagtgattgaacgagtgaattaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattcagacagaaaataccaataaagaactggatgagtgattgaacgagtgaattaatg 324
Query: 125 aatacactatatgttgattttgccaaatcaacaaataatacatatgtgttattatctctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatacactatatgttgattttgccaaatcaacaaataatacatatgtgttattatctctt 384
Query: 185 aaatgctataactattacatatttatgtttatcaggtattgtgaataaggcagatgacca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgctataactattacatatttatgtttatcaggtattgtgaataaggcagatgacca 444
Query: 245 aaacatacttaatgaaatacaagtataatgtcattttatagggtcatcggccatctgtgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacatacttaatgaaatacaagtataatgtcattttatagggtcatcggccatctgtgg 504
Query: 305 tttttgtatccacaagagactgatgaattgaatgggagccaggatgtaatcctatgggga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttgtatccacaagagactgatgaattgaatgggagccaggatgtaatcctatgggga 564
Query: 365 tactaaggaatgagttctgttacttcattagatagaaggtaagaaaaattatcacttagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tactaaggaatgagttctgttacttcattagatagaaggtaagaaaaattatcacttagg 624
Query: 425 tctgctctataatatcacaataaatgatacaacttgctgtcttcactaaagctcactatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgctctataatatcacaataaatgatacaacttgctgtcttcactaaagctcactatt 684
Query: 485 ctaaaattagggtaaaagtaacagtcaaatacataccacatgttctttgtctggaatagc 544
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 ctaaaattagggtaaaagtaacagtcaaatagataccacatgttctttgtctggaatagc 744
Query: 545 tttgtgtttgta 556
||||||||||||
Sbjct: 745 tttgtgtttgta 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_d10.g1 MSMg01no367_d10.g1 CHROMAT_FILE:
MSMg01no367_d10.g1 PHD_FILE: MSMg01no367_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:18 2005
(548 letters)
>mm_chr4_4471521_4472467
Length = 947
Score = 1023 bits (529), Expect = 0.0
Identities = 541/545 (99%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 1 ccatgtatggacccttgcacttttttcctgcaagcaggaagctcttctaaaataaaaatc 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccatgtatggaaccttgcac-tttttcctgcaagcaggaagctcttctaaaataaaaatc 686
Query: 61 tccccattgtttttatgttctcactcctttagttttacttagttcttgtttgggaaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccccattgtttttatgttctcactcctttagttttacttagttcttgtttgggaaacct 626
Query: 121 ctctgaggaaattcttgtatcatcatttgaaggtctctccctttaacatgtatttgtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctgaggaaattcttgtatcatcatttgaaggtctctccctttaacatgtatttgtctg 566
Query: 181 catgtcagtagccatctgtgtactgccatgttctgccaattcatgaggtctctgtggtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgtcagtagccatctgtgtactgccatgttctgccaattcatgaggtctctgtggtag 506
Query: 241 aattaggtctttgttgcattgacagcattcagcttgatggcagatgcagcagtagatgtt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aactaggtctttgttgcattgacagcattcagcttgatggcagatgcagcagtagatgtt 446
Query: 301 ggagacatcattggaatgaatccatttctgctcactctcagagtttttcagtagcatatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggagacatcattggaatgaatccatttctgctcactctcagagtttttcagtagcatatc 386
Query: 361 catgtaatgggagagggtcttatcttaattgagatatgagtttctctttctccaggatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgtaatgggagagggtcttatcttaattgagatatgagtttctctttctccaggatgt 326
Query: 421 gatagaaaatattcgctgagcctgaaagtcctatttaatttactaagtgagctgtatagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatagaaaatattcgctgagcctgaaagtcctatttaatttactaagtgagctgtatagt 266
Query: 481 ttggatggcctagtctctaattacacttaaacttcctaaacagcagtaaatttataaatc 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggatggccaagtctctaattacacttaaacttcctaaacagcagtaaatttataaatc 206
Query: 541 tggaa 545
|||||
Sbjct: 205 tggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space: 504106
Effective search space used: 504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
