BAC Information

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BAC

Clone NameMSMg01-367E01
Chromosome4 (Build37)
Map Location 110,769,613 - 110,769,944
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367E01.T7 (MSMg01no367_e01.b1)MSMg01-367E01.TJ (MSMg01no367_e01.g1)
ACCAG474770AG474771
length839750
length of high quality
(start - end)
386 (96 - 481)326 (80 - 405)
definitionCHROMAT_FILE: MSMg01no367_e01.b1 PHD_FILE: MSMg01no367_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:21 2005CHROMAT_FILE: MSMg01no367_e01.g1 PHD_FILE: MSMg01no367_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNNNNCCCCCCNTTATTCCANATGCCCTTCCNNNGCCCCCTATTTAT
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTTTTTTAATTTTTTATTAGGTATTTTCCTCATTTACATT
TCCAATGCTATCCCAAAAGTCCCCCGTAACCTCTCCCCCACCCCCACTCC
TCTACCCACCCACTCCTACTTCTTGGCCCTGGTGTTCCCCTATACTGAGG
CATATAAAGTTTTCACTACCAATGGGCCTCTCTTTCCACTGATGGCCTAC
TAGGCCATCTTCTGATACATATGCAGCTAGAGACTTGAGCTCTGGGGGGT
ACTGGTTAGTTTGTATTGTTGTTCCACCTATAGGATTGCAGATCCCTTTA
GCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCAT
CCAATAGCTGACTGTGAGCATCCACTTCTGAGTTTGCTAGGCCCCGGTAT
AGTCTCATAAGAGACAGTTACATTTAGGTTCCTTTCAGCAAAATCTTGCT
AGTTTATGCAATTGCGTTCGCGTTTGGACGTTGATTATGTGATGTACCCC
TTCATTTTGTCCCCTTTTACACGTTCTTTCCTTTTCGCCTTATCTTCTTC
CTTTTTTTTCTGCATATCCCCTTTTGCCCTTTTTTTCTTTCCTATTACAC
TCCTATTTTATTGTTCCCCTCCTCTTTATTCCTTCTTTTTTTTCCTTTTT
TCCCTTCTTCTTTGTTCCCCTCCACCCTTCCTTTTGTTTATCCATTTAAT
TGTACACCCTTTTCTTCCCTTATTTAATTTCTCTTTTTN
AGGCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATCATCCATATATGCATG
CACATACAATGTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCACACACACACACACACACACACACATACACTTACTAAA
GTACTGTAAAGTACTGAAGAGTTGTAAATATTAAGATAAAAATCTCTTCA
TTGAGCTGTAGGATCATGCATTAACTAGTTAAAAATTAGGTACCAGCTAG
GAATATAACTGGGCTCATTCTATCTAGCTTCAAGTCTCTCTTGAATTGGT
TCTGGCCAAGAGAGAACCATCAATCAGTGAGAGAGTACTGACACTTGTTG
ACCAAGATAAGAGTTTGTCAATGACTGCAAATGAAGAAAATACTTATTTC
TTGGAATTGTCTGGAATGTTAACAGTGAGGACCTGTAGTACTGCGGTAAA
TTTTAAAATATTCAGTCTTTGCCAAGTTGTAGCTGATATATTTGTGCACT
TATTTTTGATGTATAATTGACCTATATCTATAATTCCTCCCCCTACCCTA
TTTGTATACGCAGTTGTAATATACCCTTTTATACATTTACCAACATTCTA
TTTTTTTAATTTGTCCCCCGCTCTTATAATAATTTATTTTTTTGCTTTTT
TTTTTTTCCACACTTTTTTTCTTTATAGTACCTACCCTTTATCACTTCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_e01.g1 MSMg01no367_e01.g1 CHROMAT_FILE:
MSMg01no367_e01.g1 PHD_FILE: MSMg01no367_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:21 2005
         (326 letters)



>mm_chr4_110769419_110770144
          Length = 726

 Score =  576 bits (298), Expect = e-169
 Identities = 321/332 (96%), Gaps = 6/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatcatccatatatgcatgcacatacaatgttctt------tctctctctctctctct 54
           |||||||||||||||||||||||||||||||||||||      |||||||||||||||||
Sbjct: 195 actatcatccatatatgcatgcacatacaatgttctttctctctctctctctctctctct 254

                                                                       
Query: 55  ctctctctctctctctctctctctctctcacacacacacacacacacacacacatacact 114
           ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 255 ctctctctctctctctctctctctcacacacacacacacacacacacacacacacacact 314

                                                                       
Query: 115 tactaaagtactgtaaagtactgaagagttgtaaatattaagataaaaatctcttcattg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tactaaagtactgtaaagtactgaagagttgtaaatattaagataaaaatctcttcattg 374

                                                                       
Query: 175 agctgtaggatcatgcattaactagttaaaaattaggtaccagctaggaatataactggg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agctgtaggatcatgcattaactagttaaaaattaggtaccagctaggaatataactggg 434

                                                                       
Query: 235 ctcattctatctagcttcaagtctctcttgaattggttctggccaagagagaaccatcaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctcattctatctagcttcaagtctctcttgaattggttctggccaagagagaaccatcaa 494

                                           
Query: 295 tcagtgagagagtactgacacttgttgaccaa 326
           |||||| ||||| |||||||||||||||||||
Sbjct: 495 tcagtgtgagagcactgacacttgttgaccaa 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)