BAC Information

Click to search

BAC

Clone NameMSMg01-367G17
Chromosome4 (Build37)
Map Location 139,848,648 - 139,901,767
singlet/doubletdoublet
Overlap geneLOC100040728
Upstream genePqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
Downstream geneArhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367G17.T7 (MSMg01no367_g17.b1)MSMg01-367G17.TJ (MSMg01no367_g17.g1)
ACCAG474893AG474894
length740806
length of high quality
(start - end)		471 (19 - 489)201 (80 - 280)
definitionCHROMAT_FILE: MSMg01no367_g17.b1 PHD_FILE: MSMg01no367_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:34 2005CHROMAT_FILE: MSMg01no367_g17.g1 PHD_FILE: MSMg01no367_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,901,384 - 139,901,767)(139,848,648 - 139,848,844)
sequence
ACTCCTATATCGAGAGGATCCGCGGAATTCACCCCAAGAGTGCTCTATGT
GACAGGCATATCATGCTGGTGCCCAGGTCTGTATATGTCTCATAGTCTGT
TAGGGCTTCCACTGGGATGGCTCACCTCAGGTAAACTGAGTCACACTTGA
ATCGAGGAGTGACCATTCAGCATCACTGAGGCATGCTCAGGCACACTGCT
ATGCTCTGCCACTCACTGGCTGGGTTTTCTCAGGTCACATGACCCCTCTG
AACTTCTTTGAAAAGGACTAGTGATTCCAGGCCTATAGGATTACTGTCAT
CCCATGAACAACTCTGGGGGTTGCTGATGACACCGTCTAATGGACAGTGG
TCCTGAGAGTTGTGCAGCACACGACCTGTGCATCCGTACACGACAGCTCT
GCGTGATGTAAGACCTCTGGCACACACCCGGTGTGTGGTGAGCAATAGCC
GTTATTAATATAGCAATTCTCACTCCTGTGCATACCCAGCCCTAGGATGC
TGGATCTGGGAGGTCCAGATGGGCCCGCTTTACAGNCTGATATAAAAAAA
GAAGAATTGGTACCAGTGAATAATTTCCAGATTTAAAAACGGCTCCTGCC
CCTTGAAACTGGGTACCTTGGGGAAGTTGTTGAACTCACCTCGTTTTAAC
TCCCTGGGATAAGGTCATGAAAGAAACCCCACGCGGGTTCTGCCCCCTCC
ACTTGGAAGACACATTCACACCTTACAATAAAGGTGGGGC

TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCATGTATCCCAAGTGAGCT
TCAACTCATGGCAATCTTAATCCTCCTGCCTCGGCTTCTAAGTGCCAGCA
TCACAAGCACGAGTCCTCACAGGTAGCCAGACAGCCCTTTCTGCAGAGAC
AACGAGAAGAGTCGAGTGCTGAGTCGAAGCACCTGTGGTGGTGGGAGCTG
GGGCGTGGGGGTGGGGAGAGAGGCTGNCNCTCNTGTTTGNGANNCNNANN
GAGGNTGGGTGGNNGAGNTGTTTGTGATGGTTTTNNTGTGTNNTTTCNTA
TTTATTTGNTTATTTGTTCTTTGGGTTAATTGTTNATTTGTTCTGTTANN
AGTTTTGATGTTTGTTGCCGCCGACCCATATGACTTCCTTTTTTGTCCTG
ATTTTTTCCCTAATGACTTTTATCTTGGACACTATTTTTGAAAAGATTGC
TTGGTTATGGTGTTTCACTTTTCAGATCGCTTTTTCGCTTCTCTTTTCTC
CTTTTATACCCCATGTCCTCCTTCCCCGGTTTATTTTCCTTTGTTTTTTT
TCTTCCCTCCTCCTCTTTTTTCCTCCCCCCCCTCCCTTTTTTTTTCCCCC
CTTTTTTTTTTTCCCTTTTTTTTCCTTTTTCTCTTCTTTTTCCTCTTTTT
TCTTTTTTTCCCCCCCCCCCCCTTTTCTTCACTTATTTTTTTTTTTCTCT
TTTTTCCTCTCTCCTCTATGTTGTCTCTTTACGTCCCTTCCCTTTTCTTC
CTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_g17.b1 MSMg01no367_g17.b1 CHROMAT_FILE:
MSMg01no367_g17.b1 PHD_FILE: MSMg01no367_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:34 2005
         (471 letters)



>mm_chr4_139901384_139902254
          Length = 871

 Score =  743 bits (384), Expect = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaccccaagagtgctctatgtgacaggcatatcatgctggtgcccaggtctgtat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaattcaccccaagagtgctctatgtgacaggcatatcatgctggtgcccaggtctgtat 325

                                                                       
Query: 67  atgtctcatagtctgttagggcttccactgggatggctcacctcaggtaaactgagtcac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtctcatagtctgttagggcttccactgggatggctcacctcaggtaaactgagtcac 265

                                                                       
Query: 127 acttgaatcgaggagtgaccattcagcatcactgaggcatgctcaggcacactgctatgc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acttgaatcgaggagtgaccattcagcatcactgaggcatgctcaggcacactgctatgc 205

                                                                       
Query: 187 tctgccactcactggctgggttttctcaggtcacatgacccctctgaacttctttgaaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tctgccactcactggctgggttttctcaggtcacatgacccctctgaacttctttgaaaa 145

                                                                       
Query: 247 ggactagtgattccaggcctataggattactgtcatcccatgaacaactctgggggttgc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ggactagtgattccaggcctataggattactgtcatcccatgaacaactctgggggttgc 85

                                                                       
Query: 307 tgatgacaccgtctaatggacagtggtcctgagagttgtgcagcacacgacctgtgcatc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tgatgacaccgtctaatggacagtggtcctgagagttgtgcagcacacgacctgtgcatc 25

                                   
Query: 367 cgtacacgacagctctgcgtgatg 390
           ||||||||||||||||||||||||
Sbjct: 24  cgtacacgacagctctgcgtgatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_g17.g1 MSMg01no367_g17.g1 CHROMAT_FILE:
MSMg01no367_g17.g1 PHD_FILE: MSMg01no367_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:35 2005
         (201 letters)



>mm_chr4_139848448_139849048
          Length = 601

 Score =  358 bits (185), Expect = e-103
 Identities = 194/197 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatgtatcccaagtgagcttcaactcatggcaatcttaatcctcctgcctcggcttct 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 201 accatgtatcccaagtgagcttcaactcacggcaatcttaatcctcctgcctcagcttct 260

                                                                       
Query: 61  aagtgccagcatcacaagcacgagtcctcacaggtagccagacagccctttctgcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgccagcatcacaagcacgagtcctcacaggtagccagacagccctttctgcagaga 320

                                                                       
Query: 121 caacgagaagagtcgagtgctgagtcgaagcacctgtggtggtgggagctggggcgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacgagaagagtcgagtgctgagtcgaagcacctgtggtggtgggagctggggcgtggg 380

                            
Query: 181 ggtggggagagaggctg 197
            ||||||||||||||||
Sbjct: 381 agtggggagagaggctg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |