Query= MSMg01no367_i11.b1 MSMg01no367_i11.b1 CHROMAT_FILE:
MSMg01no367_i11.b1 PHD_FILE: MSMg01no367_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:43 2005
(516 letters)
>mm_chr4_11871826_11872741
Length = 916
Score = 870 bits (450), Expect = 0.0
Identities = 500/526 (95%), Gaps = 16/526 (3%)
Strand = Plus / Plus
Query: 7 gaggacatttatcagccatattctctctct----gtctctgtctctgtctctgtc----- 57
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 gaggacatttatcagccatattctctctctctctgtctctgtctctgtctctgtcaccat 250
Query: 58 -------tgcctctctcagcctctatgtgtatgtctgtccatccaacaagctatattatt 110
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 251 ctctgtctgcctctctcagcctctatgtgtatgtctgtccatcccacaagctatattatt 310
Query: 111 tgtaatactttatttcattgagtgaaaataggtgagaacagtgctcactaggaggcaaaa 170
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 311 tgtaatactttatttcattgagtgaaaataggtgagaacagtgcccactagtaggcaaaa 370
Query: 171 cgataagaactgattacaccaaatcactttcctacaacttatcctttcggtgtcacatct 230
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cgacaagaactgattacaccaaatcactttcctacaacttatcctttcggtgtcacatct 430
Query: 231 aataaggcttagcttgataaaggtcagaaagatgtgtggttttctcttacggtgttctta 290
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 431 aataaggcttagcttgataaaggtcagaaagatgtgtggttttctcttacagtgttctta 490
Query: 291 ttgtccatttattatattggtttgaactattcatttggatctttaattcatactgattca 350
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 491 ttgtccatttattatattggtttgaactattcatttgaatctttaattcatactgattca 550
Query: 351 accttgtacataaaggaggaaaggcaaccatcctcgtaggatggtgtgtggctatcactg 410
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 551 accttgtacataaaggaggaaaggcaaccatccttgtaggatggtatgtggctatcactg 610
Query: 411 ctactaacactttggtgaagaaactattcattccatattacaaaccttcttgctgcctct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctactaacactttggtgaagaaactattcattccatattacaaaccttcttgctgcctct 670
Query: 471 ctcataaatcaagccacaccctctgaagctgacaggttcctgtggt 516
|||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 671 ctcagaaatcaggccacaccctctgaagctgacaggttcctgtggt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_i11.g1 MSMg01no367_i11.g1 CHROMAT_FILE:
MSMg01no367_i11.g1 PHD_FILE: MSMg01no367_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:43 2005
(623 letters)
>mm_chr4_12054707_12055729
Length = 1023
Score = 1176 bits (608), Expect = 0.0
Identities = 620/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Minus
Query: 1 atagccactatgcctcaagatctccataccaagatcgaggtcagaaacttctatctccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 atagccactatgcctcaagatctccataccaagatcgaggtcagaaacttctatctccca 917
Query: 61 gcctccagattaggatcactggtgaaccttccaattctagattgtagttcattccagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gcctccagattaggatcactggtgaaccttccaattctagattgtagttcattccagata 857
Query: 121 tagtcaagttgaaaaccaggaatagccactacagggatatttttctaggataaactctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tagtcaagttgaaaaccaggaatagccactacagggatatttttctaggataaactctca 797
Query: 181 tctacatgccattgccaccctcgatgaaacacgtacttaaagtgctagaaccaggtattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tctacatgccattgccaccctcgatgaaacacgtacttaaagtgctagaaccaggtattt 737
Query: 241 tctgttgctgtagtattatttcctgacacactaaatagactgtgtcctagagtttgaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tctgttgctgtagtattatttcctgacacactaaatagactgtgtcctagagtttgaaat 677
Query: 301 aaattttaaatagccacccctatatgtctgatacatctttacctatgtgcatggtaacct 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 676 aaattttaaatagccacccctatatgtctgatccatctttacctatgtgcatggtaacct 617
Query: 361 agcaacctggtgcctcaagtctaagattattttttttctggaccttattattcaatcaac 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agcaacctggtgcctcaggtctaagattattttttttctggaccttattattcaatcaac 557
Query: 421 tcagca-gatcactattgaggctgctggggagcaggatactgcatactgtgggtattggt 479
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcag-aggatcactattgaggctgctggggagcaggatactgcatactgtgggtattggt 498
Query: 480 accatggtgacccttacaaagccttagcgaccacagcattcaaatgttgttcttcagcct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accatggtgacccttacaaagccttagcgaccacagcattcaaatgttgttcttcagcct 438
Query: 540 gttctttagcccatcatgacaccatgtaccttctcttgggtctctacaaagtctcatggg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttctttagcccatcatgacaccatgtaccttctcttgggtctctacaaagtctcatggg 378
Query: 600 cacagatctccattcctttctgga 623
||||||||||||||||||||||||
Sbjct: 377 cacagatctccattcctttctgga 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
