BAC Information

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BAC

Clone NameMSMg01-367L13
Chromosome4 (Build37)
Map Location 16,972,638 - 16,972,918
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367L13.T7 (MSMg01no367_l13.b1)MSMg01-367L13.TJ (MSMg01no367_l13.g1)
ACCAG475122AG475123
length745749
length of high quality
(start - end)
479 (73 - 551)282 (56 - 337)
definitionCHROMAT_FILE: MSMg01no367_l13.b1 PHD_FILE: MSMg01no367_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:58 2005CHROMAT_FILE: MSMg01no367_l13.g1 PHD_FILE: MSMg01no367_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCAGATCACGGAGATAAGGAATTAGAGTCTGAACATGA
GAGAGAGAAAATAAGTTTCAGAAAAGCAGTTATCCCCTGTTTGAGACCTT
TTAGCAAAAAAGAGAGAAAATGAAAATAAGCTATTTCAGAGCTCCTAGGG
ATGGAAGGAAAATGGGAGACATCCTGCTTCCTCTCTGGCTCCTATGGAGA
TATTCTTAGCTCTGATTAGGATATCTGGGTCCCTTTGAGACATGAAATTC
TATTCCCTCTCTGCCCATTGTCTGTTTTAGGTGCACCAAATTGTCCATAT
GTCTGTCTATTTATGTTTGTTTTCGTTTTGTTGTTTAAATGATTGTTGTT
CTGTGTTTCATGTTGAAAAAAATGGTTAAAACTTTATCTGCTGGCTGTCC
ATCCTTTGATTTAGTTTAACTTGTTTAAAAAGCAGTCTCAGTTTGCACAA
CAGAAACTGATAAGTTACACTGCACTGTGTCTGGGAGTCAAGAACAGCTA
GAACAGCCCTGCTGAGAACTGATTGCCAATGGAGTTCTTAAAGGGGCAGG
CAGCCTTTTGCTTGTAACAGAAAGTTAGCTTATAATTGGGAACTCAGTGG
TAGCGCCCTTTTCTTACAAATTGATCCTCGAAAACCGGTCTTTAATGATA
CTTCTCAAATATGATAATTCTTTGGTCCACGATTCTGTTCGAAGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACAGCTGGAGCATGTGGTTGTACTTATGGTAGCCAAGCGATGGA
AGGCATGGGCTTGTCAATCCAGTACAGTTACGGTGACCCAGTCAGCCAGT
CAGCAGCTGAGTGGTAGTTGGCTACAGTGGCCAGAGCAGCATAAGCAGAT
ATGACCAAGTTTCCCAAGAAACCTCTGGTGATTTTCCATCAAACATTGCA
TAGGTAGCCAAGGAGCAGTGAGTAGCAGCTCCTAAAGTAGTGGAAGCGGT
GCATTGATGAGGGTAGGTGGAATGGGAGGGTTGTCTTTTTTGTCCCCCAC
CACTGGCGATTGGGCGATGTCCTTGTTTTCTCTCTTTGTCCTCCCCCCTT
TTTTTATCTATTCTCCTCCTTCTTTTCATTTGACATTATTCTCTTTTTTT
TCTGGTTCTTTTTTCTTCTTCTTTCCTTTTTTTTTTCATCTCCTCCTCCC
TTTTTTCTATTCTCCTCTCTTTCTTCTCTTTCTTCTCTTTTTTTCCTTTT
CTCTTTCTCTATTCTTCCTTTCCCTACCTTCCGTCTACTTTTTTTCCACC
TTTATGCTTTTTTTCTATGTCTTCCCTTTTTTTTATCCTTTCGCCCCCCT
CGCCATCTTTTTTTCTTTTAACTGTCCTTCCTTTTCTTTTCCTGTTTTTC
TTCCTTATTTATTTCCTGTTATTTTGTATTCCTTCGTTTTTTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_l13.g1 MSMg01no367_l13.g1 CHROMAT_FILE:
MSMg01no367_l13.g1 PHD_FILE: MSMg01no367_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:58 2005
         (282 letters)



>mm_chr4_16972438_16973119
          Length = 682

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagctggagcatgtggttgtacttatggtagccaagcgatggaaggcatgggcttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tacagctggagcatgtggttgtacttatggtagccaagcgatggaaggcatgggcttgtc 422

                                                                       
Query: 61  aatccagtacagttacggtgacccagtcagccagtcagcagctgagtggtagttggctac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatccattacagttacggtgacccagtcagccagtcagcagctgagtggtagttggctac 362

                                                                       
Query: 121 agtggccagagcagcataagcagatatgaccaagtttcccaagaaacctctggtgatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtggccagagcagcataagcagatatgaccaagtttcccaagaaacctctggtgatttt 302

                                                                       
Query: 181 ccatcaaacattgcataggtagccaaggagcagtgagtagcagctcctaaagtagtggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccatcaaacattgcataggtagccaaggagcagtgagtagcagctcctaaagtagtggaa 242

                                                    
Query: 241 gcggtgcattgatgagggtaggtggaatgggagggttgtct 281
           || | ||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctgagcattgatgagggtaggtggaatgggagggttgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)