Query= MSMg01no367_m17.b1 MSMg01no367_m17.b1 CHROMAT_FILE:
MSMg01no367_m17.b1 PHD_FILE: MSMg01no367_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:03 2005
(442 letters)
>mm_chr4_72938320_72939161
Length = 842
Score = 816 bits (422), Expect = 0.0
Identities = 437/442 (98%)
Strand = Plus / Plus
Query: 1 aactaggggttttttgttttgttgttttttgttgtttttgcttgtttgtttgttttagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactaggggttttttgttttgttgttttttgttgtttttgcttgtttgtttgttttagaa 260
Query: 61 tacagaatttagcattatggtgcacagcaacaaagcaatcctcaactgtatttcaaggca 120
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 261 tacagaatttagcattatggtgcacagcaacaaagcagtcctcaactctatttcaaggca 320
Query: 121 caattctaccgcaaaacacctttgacctttacaatgagctctactgattgataaatactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattctaccgcaaaacacctttgacctttacaatgagctctactgattgataaatactg 380
Query: 181 ctcaggcgtaggaagtaagggttagtaataagcataaggatagatcctattgagattgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaggcgtaggaagtaagggttagtaataagcataaggatagatcctattgagattgta 440
Query: 241 aaatatatggtatctttttcataaggatgagttttatacactagagagacaaagctctat 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatatatgggacctttttcataaggatgagttttatacactagagagacaaagctctat 500
Query: 301 attagggtctaaacaatgagcaggattttgagtaatgcaggtgaataccagtttcacaga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 attagggtctaaacaatgagcaggattttgagtaatgcaggtgaataccagtttcataga 560
Query: 361 atagcagaataccagatttttagacaacatccactctagttctccaggtaaatagacgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagcagaataccagatttttagacaacatccactctagttctccaggtaaatagacgtc 620
Query: 421 attcatttttttcccgtgaaga 442
||||||||||||||||||||||
Sbjct: 621 attcatttttttcccgtgaaga 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_m17.g1 MSMg01no367_m17.g1 CHROMAT_FILE:
MSMg01no367_m17.g1 PHD_FILE: MSMg01no367_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:03 2005
(545 letters)
>mm_chr4_73108169_73109105
Length = 937
Score = 963 bits (498), Expect = 0.0
Identities = 530/545 (97%), Gaps = 8/545 (1%)
Strand = Plus / Minus
Query: 1 tttgccagcattaggaaagttattattttgaagattaagttgctgcaacccatgcaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttgccagcattaggaaagttattattttgaagattaagttgctgcaacccatgcaaatg 678
Query: 61 agtactagagccctgactagagatagcaagtgaattgagaatggatagatacatatccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agtactagagccctgactagagatagcaagtgaattgagaatggatagatacatatccag 618
Query: 121 aatatctagagtgagatgaactgtgcacactctgatggagttgaacctactgccactgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatatctagagtgagatgaactgtgcacactctgatggagttgaacctactgccactgga 558
Query: 181 agctggaacttgatctagtttattatgtgcagcacaatgggcagggttagctgaccttga 240
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 557 agctggaatttgatctagtttattatgtgcagtacaatgggcagggttagctgaccttga 498
Query: 241 taggaggtcatatatattgatagggtgaactatatctggctataaacatctaggaggaag 300
||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taggaggtc-------tttat-gggtgaactatatctggctataaacatctaggaggaag 446
Query: 301 aagccacagttgctaacttgttgttcacattgataagtcactggataggagaaatgttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagccacagttgctaacttgttgttcacattgataagtcactggataggagaaatgttgt 386
Query: 361 gccagttttgagcttgacttacctgaaaaaaagatttttcaatttaccaggggtctgagg 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 gccagttttgagcttgacttacctgaaaaaaagatttttcaacttaccaggggtctgagg 326
Query: 421 ccatggtttgtgtcctggttatactcatgccaggaatacacttaagacttcactcaccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatggtttgtgtcctggttatactcatgccaggaatacacttaagacttcactcaccaa 266
Query: 481 taattcctcagttctctacattaaagtctttatgttatttataactcanagtcttcatat 540
|||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct: 265 taattcctcagttctctatattaaagtctttatgttatttataactaaaagtcttcatat 206
Query: 541 aaatg 545
|||||
Sbjct: 205 aaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 937
Length adjustment: 10
Effective length of query: 535
Effective length of database: 927
Effective search space: 495945
Effective search space used: 495945
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
