BAC Information

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BAC

Clone NameMSMg01-367O13
Chromosome4 (Build37)
Map Location 54,763,653 - 54,763,892
singlet/doubletsinglet
Overlap genenone
Upstream geneFcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
Downstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O13.T7 (MSMg01no367_o13.b1)MSMg01-367O13.TJ (MSMg01no367_o13.g1)
ACCAG475263AG475264
length711713
length of high quality
(start - end)
542 (65 - 606)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no367_o13.b1 PHD_FILE: MSMg01no367_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:12 2005CHROMAT_FILE: MSMg01no367_o13.g1 PHD_FILE: MSMg01no367_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGATACTTTTGTATGACATATTTGGAACATATTTACTTCCCTCC
TCCATCATCCAATTCCTCTCAATTCCACGCTCCCTATTTCCAACCCACTC
AACTTTGACACCCTTCCCCCGCTTTATTGAACACATCAGGGACAATTGGT
ACTGCCCATATGTTCTTGGACGTGTGGCCTTCCACAGCAGTGGTTCTCAA
CCTTCCTAACACTGCAAACCTTTTATACAGCTCTTTATGTTATGGTGACC
CTGAGCGATAAAATTATTTTATTGCTACTTCATAACTGTAATTTTGCTAC
TATTATGAACCATAATGTAGCCATCTGATACACAGAGAATCTGATATTTA
ATATTGACCTTTGGGGGTCGTGACCCTCAGGTTAAGAACCATCGCACTTA
AGCATTGTGAACCTTCCAATGGTCACATACTTAAGAAAATCAACTCTCCC
CTTCTCGGTAGCTATAAACTGCCAATCCCAATAGCTCCTTAGTTAGGGTT
GAGACATAGAGCACACCTGTCTTTCCCAGGCTGTGATTTGTCTGTCTTGA
GCTTTTATAGGTCTTATACATGTTATCACAGCTATTGATAGCTCATATGG
GCACCTGCCTTGGTATGTCCAGAAAGAATTGTTTCCTTGAAATCATCTAT
CGCCTCTGGAN
TTCCTCTCCGATGCAAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTCACGCGGAATTCTGAAGAAACCAAGATTGG
CTATCACATCTAGACCCCCACCACTTGCTTGGTCTAAGGTCTAAGGAATA
TTAAGTAAGGAATATTCAGGTCCTTGTCTAAGGAATATTAAGTAGCTCAG
TGTCCTGAACTTGTCCCCTTCTCTGTAAAGCAATAGCAGCACCTCACAGG
GTGTCCATGGGGCTCAGACAGAATCATAAAAATGAGTTGCAAACTATTAA
ACTATAAATGTAAACTTATAACACTTCTTAGAGCTATCACATCTACTTGG
ATTCATTGAAATGATAATACTATGAGCCTTTAAGGATACCTCTTGCTATC
CCCAAGTCTAACCTTTCTCTACTGTGGGTCTTTAAGACTTTGGAAAACTT
CACAACATTTAAAACTCAAATTCTAGACTTTCGTTTAAAGTTAGGTAAGT
TTCTCAACTTCAGGCCAAATTTGAGATGATTGTAGTGAACTAAAAATTAA
AAGTGATCATGTCTTGTATATGTGGCATACACAGCTGGACACAGCCCTCA
TTCATTCTATTTGTCCCAAGCCTCATTCTTTTACACTTTCTGTCTTCAGC
CCTTTGAATTCTATCTTGTAGCTACCAGGCCACTATGAATATCTTCCAAG
AAGAACTCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o13.g1 MSMg01no367_o13.g1 CHROMAT_FILE:
MSMg01no367_o13.g1 PHD_FILE: MSMg01no367_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:12 2005
         (240 letters)



>mm_chr4_54763453_54764092
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgaagaaaccaagattggctatcacatctagacccccaccacttgcttggtctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgaagaaaccaagattggctatcacatctagacccccaccacttgcttggtctaag 260

                                                                       
Query: 61  gtctaaggaatattaagtaaggaatattcaggtccttgtctaaggaatattaagtagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctaaggaatattaagtaaggaatattcaggtccttgtctaaggaatattaagtagctc 320

                                                                       
Query: 121 agtgtcctgaacttgtccccttctctgtaaagcaatagcagcacctcacagggtgtccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtcctgaacttgtccccttctctgtaaagcaatagcagcacctcacagggtgtccat 380

                                                                       
Query: 181 ggggctcagacagaatcataaaaatgagttgcaaactattaaactataaatgtaaactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggctcagacagaatcataaaaatgagttgcaaactattaaactataaatgtaaactta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)