BAC Information

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BAC

Clone NameMSMg01-367P01
Chromosome4 (Build37)
Map Location 61,997,204 - 61,997,635
singlet/doubletsinglet
Overlap geneFkbp15
Upstream geneLOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2
Downstream geneSlc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P01.T7 (MSMg01no367_p01.b1)MSMg01-367P01.TJ (MSMg01no367_p01.g1)
ACCAG475287AG475288
length742753
length of high quality
(start - end)
364 (73 - 436)426 (77 - 502)
definitionCHROMAT_FILE: MSMg01no367_p01.b1 PHD_FILE: MSMg01no367_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:14 2005CHROMAT_FILE: MSMg01no367_p01.g1 PHD_FILE: MSMg01no367_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTTACCAATACCGAATGGCTGAGAAACACCTGAAA
AAATGCACAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCT
GAGATTCCACTTCACACCAGTCAGAATGGCTAAGATCAAAAAATTCAGGT
GACAGCAGATTCTGGCGAGGACGTGGAGAAAGAGGAACACTCCTTTATTG
TTGGTGGGATTGCAAGTTTGTACAACCACTCTTAAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACTTGAGGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAATATGTCCCAACCGGCAATAAGGATACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAG
TCAGATGTCCTTCATCAGAGGAATGGATACAGAAAACGCGGTACATTTAC
ACATCGGAGTACTACTCAGTCCTTATCATCAATGCATTTATGATATTCCC
ACGCTAACGGCTGGTCTTGGAGGTTACCATCCTGAGTGAGGCAACATTAT
CCTCTACCAACTCTTATGATATGCTATCCCTGATAATTGTATATTATCTC
CCAATCCCTTTTTTCCCGATATTTTTTACTACCCCCTGTTTCTCCCCGCA
CCCTGACCATTTCTCATTATCCCTGGCGCATAGTTTTCCCCT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCATGTGTATTTGATCTGA
TGAGCATTTCCTCACTTCTGACGTCTCTAGGGCTTAGAGGACGGGCTACT
GGGCATGAAGAAAGGAGGAAAGCGCTTAATTATCACTCCTTCAGCCTGCG
CTGCTGGCTCTGAAGGAGTAATAGGCTGGACTCAGCCAACAGACTCCATC
CTGGTGTTTGAGGTAGAAGTTAGGCGGGTAAGTGAAACTGGCCTGTGTTC
TTATAATTCAGATTCTGAAGATATAGCTAGCTTTTAAAATAGAAGTGGTA
GGGTAGGACAAAGGTTGGGAAAGTTCTTTCCTTCAGGCATGAGGTCTGAG
TTCAGTCCCCAGGACGTACATAAACATGCTGACACGGTGGTGCAGGTTTG
TAGTGACCACACATATTTGTATACATAGCCATGCGCGCGCGCGCACACAC
ACACACACACACACTCACACTCTTGTTTTTAAGCTTTAGAATATATGATG
AATGATTTTCTCTGACAATGGCATTGGAGCTAAGCATCTTGTCTTTTTTC
AATGTATAAAAATCCTGCCAGTAACGTGTGGCGTGCTCATACTTTTAATC
GCATTACTTGTTGACGCTGATGCATCCCCCATTCCTCCTGACCCTTTCGT
TTACCCTTGCTCTTTTTTTTTGGTTTTTTTGGTCCCTTTCCTCCCTCACC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p01.g1 MSMg01no367_p01.g1 CHROMAT_FILE:
MSMg01no367_p01.g1 PHD_FILE: MSMg01no367_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:14 2005
         (426 letters)



>mm_chr4_61997153_61997978
          Length = 826

 Score =  754 bits (390), Expect = 0.0
 Identities = 419/432 (96%), Gaps = 6/432 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttcatgtgtatttgatctgatgagcatttcctcacttctgacgtctctagggctta 60
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttgttcacgtgtattttatctgatgagcatttcctcacttctgacgtctctagggctta 424

                                                                       
Query: 61  gaggacgggctactgggcatgaagaaaggaggaaagcgcttaattatcactccttcagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaggacgggctactgggcatgaagaaaggaggaaagcgcttaattatcactccttcagcc 364

                                                                       
Query: 121 tgcgctgctggctctgaaggagtaataggctggactcagccaacagactccatcctggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgcgctgctggctctgaaggagtaataggctggactcagccaacagactccatcctggtg 304

                                                                       
Query: 181 tttgaggtagaagttaggcgggtaagtgaaactggcctgtgttcttataattcagattct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 303 tttgaggtagaagttaggcgggtaagtgaaactggcctgtgttcttataaatcagattct 244

                                                                       
Query: 241 gaagatatagctagcttttaaaatagaagtggtagggtaggacaaaggttgggaaagttc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 243 gaagatatagctagcttttaaaatagaagtggtagggtaggacgaaggttgggaaagttc 184

                                                                       
Query: 301 tttccttcaggcatgaggtctgagttcagtccccaggacgtacataaacatgctgacacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 183 tttccttcaggcatgaggtctgagttcagtccccaggacgtacataaacatactgacacg 124

                                                                       
Query: 361 gtggtgcaggtttgtagtgaccacacatatttgtatacatagccatgcgc------gcgc 414
           ||||||||| |||||| |||||||||||||||||||||||||||||||||      ||||
Sbjct: 123 gtggtgcagatttgtattgaccacacatatttgtatacatagccatgcgcttgcgcgcgc 64

                       
Query: 415 gcgcacacacac 426
           ||||||||||||
Sbjct: 63  gcgcacacacac 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)