BAC Information

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BAC

Clone NameMSMg01-367P04
Chromosome4 (Build37)
Map Location 28,002,499 - 28,002,663
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2
Downstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P04.T7 (MSMg01no367_p04.b1)MSMg01-367P04.TJ (MSMg01no367_p04.g1)
ACCAG475293AG475294
length740777
length of high quality
(start - end)
538 (51 - 588)176 (59 - 234)
definitionCHROMAT_FILE: MSMg01no367_p04.b1 PHD_FILE: MSMg01no367_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:15 2005CHROMAT_FILE: MSMg01no367_p04.g1 PHD_FILE: MSMg01no367_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCAGACCTTCAAAGAAGACCTAATACCAATATTCTTCA
AACTATTCCACAAAATAGAAAGAAAAGGAAGACTACCCAATTCATTGTAT
GCAGCAACAATTAAGCTTATACCTAAACCACACAAACACCAAACTAAGAA
AGAGAACCTCAGACCAATTTCCCTTAGGAACATTGATGCAAAAGTACTTA
ATAAAATTCTTGCCATCTGAATCCAAGAACACACCAAAACAATCATTTCC
CACAATCAAGTAGGCTTCATCACAGGAATACAGGGATGTTTCAATATACA
GAAATCCATCAATGTAATCCATTACATAAACAAATTCAAAGATAAAAACC
ACGTTATCATTTCATTAGATGCTGAAAATGCATTTGACAAAATTCAGCAT
CCCTTCATGTTAAAAGTCTTGGAAAGGTCAGGAATTCAAGGCCCATACCT
AAGCATAGTATAAGCAACACACAGTAAACCAGTTGCCAACATCAAGCTAT
AGAGGGGGAAACTTGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGC
TGCCCACTCTTTCCCTGTCTATTAAATATAGAACTTGAAGTTGATCTATA
GGAGGACTTCCAGGACACCAGATGCTCACAGAGAATCTGTATCCTGAACA
TCTTACATGAATGAATGAATGAATAATCAACTGATATGAN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCACTTCTCTGCTGATGAGCAATTTCAAACAGTTTTCAGGGTA
AGAGACTTTTTTCCCTTCATATGTTCTCATATTTTTCCCTTCTTTATCAC
CACAAGCAATAACTTTTAGGTTATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATGTATATATAGAGAGAGAGAG
AGAGTGGGTGGGGGGGGGGTGTTGGTGGGTGTGTGTGGGGGTGTGTGTGT
GTGTGTGTGTGGTGGTGTTGGGGGTGTGGGGTGGGGGGGTGGGTGGGGGT
GGGGGTGTGGGTGGGTAGGCGGTGGACTGTGAGTGGGTGAGTGTGCGCGT
CCGGGCGCGGCGCTCTCCCCCTCTCGGTGACGGGCATACCTATTATGTTT
TTTTTTCATCCCGGCGCCCGCCGCTCTCCTTTGACTTTTTCCTTGCTACT
GCTTTCCGTTGTTGCCTCGGCCGTCCGGGCACGTGGTGTTTTATTCCCCT
CTTCTTCCCTCTTTGTTCTCTATATTGGCCGATCTGGCTAGCGTCCCTTA
TCCTCTTGTTCTCCCCTTCTCTTTTTGGCCTGCTCGCTCCGTTTCCCCAT
TACACGCAGCGTGATGATTCCCGCGCGTTTTCTTCCTTTTCTATCGTGCT
GTCCGCTCCCGCGTCTGATCTCTTATCCCCTAGCCATCACACTTTTCGTC
CGGTGCCCTTTCCCTCTGTTCGCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p04.g1 MSMg01no367_p04.g1 CHROMAT_FILE:
MSMg01no367_p04.g1 PHD_FILE: MSMg01no367_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:15 2005
         (176 letters)



>mm_chr4_28002299_28002874
          Length = 576

 Score =  288 bits (149), Expect = 1e-82
 Identities = 158/165 (95%), Gaps = 7/165 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttctctgctgatgagcaatttcaaacagttttcagggtaagagacttttttcccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttctctgctgatgagcaatttcaaacagttttcagggtaagagacttttttcccttc 260

                                                                       
Query: 61  atatgttctcatatttttcccttctttatcaccacaagcaataacttttag-------gt 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 261 atatgttctcatatttttcccttctttatcaccacaagcaataacttttagcttttaggt 320

                                                        
Query: 114 tatatatatatatatatatatatatatatatatatatatatatat 158
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatatatatatatatatatatatatatatatatatatatat 365



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 127 atatatatatatatatatatatatatatatatatatatatatata 171
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 125 atatatatatatatatatatatatatatatatatatatatatata 169
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 123 atatatatatatatatatatatatatatatatatatatatatata 167
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 121 atatatatatatatatatatatatatatatatatatatatatata 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 119 atatatatatatatatatatatatatatatatatatatatatata 163
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 117 atatatatatatatatatatatatatatatatatatatatatata 161
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 87.7 bits (45), Expect = 4e-22
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 115 atatatatatatatatatatatatatatatatatatatatatata 159
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatata 321



 Score = 85.8 bits (44), Expect = 1e-21
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                       
Query: 114 tatatatatatatatatatatatatatatatatatatatatata 157
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatatatatatatatatatatatatatatatatatatatatata 321



 Score = 85.8 bits (44), Expect = 1e-21
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                       
Query: 129 atatatatatatatatatatatatatatatatatatatatatat 172
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatatatatatatatatatatatatatatat 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 14
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)