Query= MSMg01no368_c06.b1 MSMg01no368_c06.b1 CHROMAT_FILE:
MSMg01no368_c06.b1 PHD_FILE: MSMg01no368_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:30 2005
(550 letters)
>mm_chr4_138973683_138974632
Length = 950
Score = 1042 bits (539), Expect = 0.0
Identities = 545/547 (99%), Gaps = 1/547 (0%)
Strand = Plus / Plus
Query: 5 gaattc-cagggctctcaaagacattttgtttatatttcattttattgtgggagtgggaa 63
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacagggctcttaaagacattttgtttatatttcattttattgtgggagtgggaa 263
Query: 64 tgcttgtttgcctgatgtctgtgcaccacttgtgtgctgttgcctgtgggagccagaaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcttgtttgcctgatgtctgtgcaccacttgtgtgctgttgcctgtgggagccagaaga 323
Query: 124 gggcgctggggtctgtgggacaagagtgacaggtggttgtgagttgccatgtggtgctgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggcgctggggtctgtgggacaagagtgacaggtggttgtgagttgccatgtggtgctgg 383
Query: 184 gactcaaacccaggctttctgggatagtattgggtgctctaactgctgagccatttgtcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gactcaaacccaggctttctgggatagtattgggtgctctaactgctgagccatttgtcc 443
Query: 244 aacattcccacagagtctcttttctccctcctcctacccctacccctgccacacacaagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacattcccacagagtctcttttctccctcctcctacccctacccctgccacacacaagt 503
Query: 304 tccttccccatattcaaattaaccacggccctctgtgtgaccatgagttttgagctgacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccttccccatattcaaattaaccacggccctctgtgtgaccatgagttttgagctgacc 563
Query: 364 gtttgtagcctggtgtcttgagcactcttaaaaatgaaagactatacttagaataccttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttgtagcctggtgtcttgagcactcttaaaaatgaaagactatacttagaataccttt 623
Query: 424 tttttaattagccaagttggagaaggtgtgtgtgctgtgcttctgggcaccctgaccccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttttaattagccaagttggagaaggtgtgtgtgctgtgcttctgggcaccctgaccccc 683
Query: 484 atggcaacagatatgctggcgaacggtgatgggaccggcttccctgagctcatggttgtg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atggcaacagatatgctggcgaacggtgatgggaccggcttccctgagctcatggttgtg 743
Query: 544 atggcca 550
|||||||
Sbjct: 744 atggcca 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_c06.g1 MSMg01no368_c06.g1 CHROMAT_FILE:
MSMg01no368_c06.g1 PHD_FILE: MSMg01no368_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:30 2005
(466 letters)
>mm_chr4_139171960_139172825
Length = 866
Score = 901 bits (466), Expect = 0.0
Identities = 466/466 (100%)
Strand = Plus / Minus
Query: 1 tttggagctcaaagtggctcagcttaagggagaaggcacagttgcactgcatcgacgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tttggagctcaaagtggctcagcttaagggagaaggcacagttgcactgcatcgacgcac 607
Query: 61 aaaagtctgcgtttgtggtgtgtgtggggacaatagaaaaatcgacagcaccattccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaaagtctgcgtttgtggtgtgtgtggggacaatagaaaaatcgacagcaccattccatg 547
Query: 121 ggtcggtggtggaggaaggaaggaagcagcggtcccgctgggcctccggagaagggagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggtcggtggtggaggaaggaaggaagcagcggtcccgctgggcctccggagaagggagga 487
Query: 181 cagaagtctgtgtcgaggagtggagcccacacggctcagtggggagaggaggctggaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagaagtctgtgtcgaggagtggagcccacacggctcagtggggagaggaggctggaccc 427
Query: 241 catcaccaagaccaccaggagcgtcgggcctccgtcatcagctgaccatgggctccacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 catcaccaagaccaccaggagcgtcgggcctccgtcatcagctgaccatgggctccacat 367
Query: 301 ccgcctcccgctccaggtcttcctggatttcgtctgtacttcctgagtcactgctggcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccgcctcccgctccaggtcttcctggatttcgtctgtacttcctgagtcactgctggcca 307
Query: 361 cggagctgggggacggtgaattcctgcattagaaaccaaagcctttcagagagcagcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cggagctgggggacggtgaattcctgcattagaaaccaaagcctttcagagagcagcctg 247
Query: 421 ggggaccctaacggcccagggcccggagctctggccggtcacacct 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggggaccctaacggcccagggcccggagctctggccggtcacacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
