BAC Information

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BAC

Clone NameMSMg01-368D03
Chromosome4 (Build37)
Map Location 89,492,289 - 89,492,914
singlet/doubletsinglet
Overlap genenone
Upstream geneIfna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneZfp352, LOC619842, LOC435792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368D03.T7 (MSMg01no368_d03.b1)MSMg01-368D03.TJ (MSMg01no368_d03.g1)
ACCAG475480AG475481
length7341,059
length of high quality
(start - end)		630 (45 - 674)---
definitionCHROMAT_FILE: MSMg01no368_d03.b1 PHD_FILE: MSMg01no368_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:34 2005CHROMAT_FILE: MSMg01no368_d03.g1 PHD_FILE: MSMg01no368_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATTCCTGACAGATTTCTGCAGATAATAATCCCTGGAAAAGAAAA
ATAAAACTGGATGGAAATCTGGGCATTACCTGATCACTTGGGTGGTGGTA
GGTCATTGCCTATTTAGTCTGTACTGTAGGTAACCCTGAGATTATGTTTG
TTTTTTTAAGACTTAGGTGAATTCTTTTCTGGAGTAAATATGGCTGAATC
TATGATTAAAAGGGTGAGTGTAAAGGAAGTTTAATCCAGTAACATGGCTT
CTTTGATTAGATGCAAAGACTTCCTAGGTATGTGTGATCTGGCTGGAATG
AAGACACACACTTAGTATATATCTTTAATACCTCTGGCTGGAATCCTTTA
ATACATAACTTTAATCCCTAACAATTATATCCAATTGAGGCACAGACAAA
AGTGAAAAAATCAGAGAAAAATTCGACCAAATGAGTCAAAGATAGGATAT
GCCCAACGTTCAGGGGAAAAGCTATTTAAGAGCAGCACAGGGAGAGTGAA
GGCACGACAGTCAGTTTGGACAGCAGGGGCAGCTGGGAGTCAGTGCAGTG
AGTGCCATGCAGGGCAGTTGAGTTGCTTTATGAGTTCATGTAGTTCAGTT
ACGTTCAGTGAAGTTCAGCAGATCCACTTGAAGCCAGAGGATAAGAAGGA
GCCAGCAAGAGTTCAGAAAGAACTAGGACCGGTG

GCTGTTTTTTNGTGATTGGGGGCGGCGCAACGGTCGCCCCCCACGCCGCA
CCGGGGAACCCGAAGAGGAGGTGACTGAGCGTACGCCTCCATATATACAC
TCTAGCAGAAAACAGGAATCGAGCAGGAATGCCAGAAAATATGCGCCTGA
GCAGAATCATTTATACAACATTATGCAAAAACAAATTCCCATAACACCAC
CATCCCCCACCAACATGTAAATAAAGAATACCTCGCCCTCGCGTCATCGG
ACGCTCGTTGCACTAGCTCGAAACGTGTGCAATCGTCTGGAGAGGCAGCA
ACGCCCCTTGTTCGCACTTTGTATACATCGATTATTTCGACTTCCCCATC
TGGAAAGAATCTGCATATTCACTTAACTCGGGGACGTTGTTTGTGTTCCT
TTTTTCAAAACCATTCCACCCTCGAATAAAGCATCTGAACACGCAGATAC
CTATATCCCAGTTCAACTCCCTCCCTCAACTTCTCACCTACACCCTCTCG
TGCTACTGCGGCGCATAAATATCTTCCTATACCCGTCCTATACCACTTCG
GCTAACAACACCTCGCTATACGTTACACTTCCAGACTCACTCGTCCGCAA
AACCCCGCCGGATGATCACCTATATATCGACCCCCTTCAAGCTGATTTAA
GCCTCCCCCATCCCACACAGAATTATTCAATCCTTCTTCCACGACCTGTT
AANNNCNCCCTCTGAAGAACNTNNTNTNNNNNNNNNNCNGGCCCTAATGG
CTCAATTNATTGTNNTTTTTTAAGANNTTCAATAATAAGCNNNANNAGCC
NNNNNCTGNNNNNNNGTCCNNGANCNNATNNANNTGNNANNATGNNTTTN
NNNANCTNNGGCTNANNTNGATNGANNTGNNNCANTNGNNCCNNAGAANN
NNGNANNCCTNGNCNTAGCNNGNNTNNNNNNNCNNNAANNNNCNNNCNTG
NNNNNNATGCNCCCTCGNNNCANNTTCTNNNCNNGNCNANNNNCANNNAG
CCCNGGCNGCGTGCGNGGGNGATGGNCNNGNGTCAAGTGGNNNTGGAGGG
CGTGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_d03.b1 MSMg01no368_d03.b1 CHROMAT_FILE:
MSMg01no368_d03.b1 PHD_FILE: MSMg01no368_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:34 2005
         (630 letters)



>mm_chr4_89492085_89493114
          Length = 1030

 Score = 1164 bits (602), Expect = 0.0
 Identities = 620/626 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttattcctgacagatttctgcagataataatccctggaaaagaaaaataaaact 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattccagagagatttctgcagataataatccctggaaaagaaaaataaaact 264

                                                                       
Query: 65  ggatggaaatctgggcattacctgatcacttgggtggtggtaggtcattgcctatttagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatggaaatctgggcattacctgatcacttgggtggtggtaggtcattgcctatttagt 324

                                                                       
Query: 125 ctgtactgtaggtaaccctgagattatgtttgtttttttaagacttaggtgaattctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtactgtaggtaaccctgagattatgtttgtttttttaagacttaggtgaattctttt 384

                                                                       
Query: 185 ctggagtaaatatggctgaatctatgattaaaagggtgagtgtaaaggaagtttaatcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggagtaaatatggctgaatctatgattaaaagggtgagtgtaaaggaagtttaatcca 444

                                                                       
Query: 245 gtaacatggcttctttgattagatgcaaagacttcctaggtatgtgtgatctggctggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaacatggcttctttgattagatgcaaagacttcctaggtatgtgtgatctggctggaa 504

                                                                       
Query: 305 tgaagacacacacttagtatatatctttaatacctctggctggaatcctttaatacataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaagacacacacttagtatatatctttaatacctctggctggaatcctttaatacataa 564

                                                                       
Query: 365 ctttaatccctaacaattatatccaattgaggcacagacaaaagtgaaaaaatcagagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttaatccctaacaattatatccaattgaggcacagacaaaagtgaaaaaatcagagaa 624

                                                                       
Query: 425 aaattcgaccaaatgagtcaaagataggatatgcccaacgttcaggggaaaagctattta 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 aaattcgaccaaatgagtcaaagataggatatgcccaactttcaggggaaaagctattta 684

                                                                       
Query: 485 agagcagcacagggagagtgaaggcacgacagtcagtttggacagcaggggcagctggga 544
           |||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 685 agagcagcacagggagagtgaaggcacgtcagtctgtttggacagcagaggcagctggga 744

                                                                       
Query: 545 gtcagtgcagtgagtgccatgcagggcagttgagttgctttatgagttcatgtagttcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcagtgcagtgagtgccatgcagggcagttgagttgctttatgagttcatgtagttcag 804

                                     
Query: 605 ttacgttcagtgaagttcagcagatc 630
           ||||||||||||||||||||||||||
Sbjct: 805 ttacgttcagtgaagttcagcagatc 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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