BAC Information

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BAC

Clone NameMSMg01-369D21
Chromosome4 (Build37)
Map Location 14,730,747 - 14,746,329
singlet/doubletdoublet
Overlap geneOtud6b
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
Downstream geneLOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095, LOC633695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369D21.T7 (MSMg01no369_d21.b1)MSMg01-369D21.TJ (MSMg01no369_d21.g1)
ACCAG476277AG476278
length727752
length of high quality
(start - end)		487 (12 - 498)419 (71 - 489)
definitionCHROMAT_FILE: MSMg01no369_d21.b1 PHD_FILE: MSMg01no369_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:55 2005CHROMAT_FILE: MSMg01no369_d21.g1 PHD_FILE: MSMg01no369_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,745,858 - 14,746,329)(14,730,747 - 14,731,165)
sequence
CGACTCCTATATGGAGAGGATCCGCGGAATTCACTTTGTAGACCGGGCTC
ATCTTGTACTCACAAAGATCCACCTCTCTGCCTCCCAAGTCCTGGATTTA
AAGGCATTGCACAAGTAAGTGTAGGGACTGGACCACTGAATCTTATAAGA
CAGAACTTGGTAATCAGCTAGTCATGTTGTTCATGTTTTTAACTAGTCCT
TACAAGGACAGGTGTGGTTGCAAATGCCATTAATCCCAGCACTTGGAAGT
CTGAGGTAGGAGGTTGGAGAGTATTGGCTAGTCTCAGCTACCATAGCAAG
GCACTGCTTCAAATAAGCAAACAAATTAGCAGATTTTCTAAGAAGATATC
CCTTGCCCCTTCCTAGCCGCTCCTTTTTCTTCTGTGAAACAAGCTCTCAC
ATTGCAGGCCAGGCTGGACTAAAACACTGCAGCCCAAGCTGTCCTTAGGC
CTGCAGATCCTGTATCTGCTTCCCAGGTACACTTAGAGACCTAGGCCACC
GCACCTGGTTATACCAAAGGCTTCTTTATGTGTTAGTACCGAGCGAGGTG
CTGGGAACATACACTCCGATGAATGACATCCTTGGCCCCCATGGTCTGAA
CTTAGAGTTGACCACATGGGAAATCATTCCGACGGCCCAATAACCCCACC
CATGCCTCCTTCCTATTCATGGGAACTCACCCTACACCCCTGACCTTCCC
TATTCCCTGCCCTCCCACACAGCTGCG

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAAATACAGATTATGAAAGAAACCAATGC
ATTTACTTGACTTGTTTTGGCAAGCTTATTTTGTGATTAAAGTGTGGTCT
GGGACTTGGGTAAAAGTTTTCAAACTAGCAGATGCTTCATATGCTCAAAA
CGGCTACAGTAACTCTCTGTCCTATAATAAATGGCCCCCGTTTCTCTTGG
TTCACTTTTTAAAGCAAATGTGGAAATAGAAAGTTTGTATTAGGGCCCTG
TACGGCCACAGGCCTGCCTTCTGGTGAGAACCTTACTGATGACTAGTCAT
GTGGCATGGACAAAGAACTCTTTAAGTCTCCTCCCCTTAGCTTTACAACA
GGCATGAAAACACCAAACCTGGCACTGGGGGATGAACAAGACCACGAGTG
TAAACTAGTTAGCACAACTCCGGGAACAAAGTGAGTGTTCAAGAANAGTT
CATTAGCTTTTGTGCAATTTCATATACACAAATAAACCAAGATCCCCACT
GTTATTTTAACACTGAGATGTTAGCACTACTCAGCCGACACAGTGGTTAG
CACATGCACACCACATGCAAGACCTGCCCTCCCTGCTGGCAATCATGGGA
CAAAATCCCCTTCTTTAATCTCCTTTTGTTAAAGGGGGCCAACTATGTCG
GGGCAAAAAACCTCTTGTAAACCAACCTGGGCTTGGATTCCAAAAACCCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_d21.b1 MSMg01no369_d21.b1 CHROMAT_FILE:
MSMg01no369_d21.b1 PHD_FILE: MSMg01no369_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:55 2005
         (487 letters)



>mm_chr4_14745852_14746738
          Length = 887

 Score =  874 bits (452), Expect = 0.0
 Identities = 467/472 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcactttgtagaccgggctcatcttgtactcacaaagatccacctctctgcctccc 75
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 478 gaattcactttgtagaccgggctcatcttgtactcacaaagattcacctctctgcctccc 419

                                                                       
Query: 76  aagtcctggatttaaaggcattgcacaagtaagtgtagggactggaccactgaatcttat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aagtcctggatttaaaggcattgcacaagtaagtgtagggactggaccactgaatcttat 359

                                                                       
Query: 136 aagacagaacttggtaatcagctagtcatgttgttcatgtttttaactagtccttacaag 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 358 aagacagaacttggtaatcagctagtcatgttgttcatgtttttaactagttcttacaag 299

                                                                       
Query: 196 gacaggtgtggttgcaaatgccattaatcccagcacttggaagtctgaggtaggaggttg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gacaggtgtggttgcaaatgccattaatcccagcacttggaagtctgaggtaggaggttg 239

                                                                       
Query: 256 gagagtattggctagtctcagctaccatagcaaggcactgcttcaaataagcaaacaaat 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gagagtattggctagtctcagctaccatagcaaggcactgcttcaaataagcaaacaaat 179

                                                                       
Query: 316 tagcagattttctaagaagatatcccttgccccttcctagccgctcctttttcttctgtg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tagcagattttctaagaagatatcccttgccccttcctagccgctcctttttcttctgtg 119

                                                                       
Query: 376 aaacaagctctcacattgcaggccaggctggactaaaacactgcagcccaagctgtcctt 435
           ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 118 aaacaagttctcacattgcaggccaggctggactagaacactgcaacccaagctgtcctt 59

                                                               
Query: 436 aggcctgcagatcctgtatctgcttcccaggtacacttagagacctaggcca 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aggcctgcagatcctgtatctgcttcccaggtacacttagagacctaggcca 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_d21.g1 MSMg01no369_d21.g1 CHROMAT_FILE:
MSMg01no369_d21.g1 PHD_FILE: MSMg01no369_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:55 2005
         (419 letters)



>mm_chr4_14730547_14731365
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatacagattatgaaagaaaccaatgcatttacttgacttgttttggcaagcttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatacagattatgaaagaaaccaatgcatttacttgacttgttttggcaagcttatt 260

                                                                       
Query: 61  ttgtgattaaagtgtggtctgggacttgggtaaaagttttcaaactagcagatgcttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgattaaagtgtggtctgggacttgggtaaaagttttcaaactagcagatgcttcat 320

                                                                       
Query: 121 atgctcaaaacggctacagtaactctctgtcctataataaatggcccccgtttctcttgg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 atgctcaaaacggctacagtaactctctgtcctataataaatggaccccgtttctcttgg 380

                                                                       
Query: 181 ttcactttttaaagcaaatgtggaaatagaaagtttgtattagggccctgtacggccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcactttttaaagcaaatgtggaaatagaaagtttgtattagggccctgtacggccaca 440

                                                                       
Query: 241 ggcctgccttctggtgagaaccttactgatgactagtcatgtggcatggacaaagaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctgccttctggtgagaaccttactgatgactagtcatgtggcatggacaaagaactc 500

                                                                       
Query: 301 tttaagtctcctccccttagctttacaacaggcatgaaaacaccaaacctggcactgggg 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaagtctcctcctcttagctttacaacaggcatgaaaacaccaaacctggcactgggg 560

                                                                      
Query: 361 gatgaacaagaccacgagtgtaaactagttagcacaactccgggaacaaagtgagtgtt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgaacaagaccacgagtgtaaactagttagcacaactccgggaacaaagtgagtgtt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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