BAC Information

Click to search

BAC

Clone NameMSMg01-369J15
Chromosome4 (Build37)
Map Location 148,468,666 - 148,644,114
singlet/doubletdoublet
Overlap genePex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
Upstream gene2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
Downstream geneLOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J15.T7 (MSMg01no369_j15.b1)MSMg01-369J15.TJ (MSMg01no369_j15.g1)
ACCAG476547AG476548
length782729
length of high quality
(start - end)
347 (11 - 357)426 (75 - 500)
definitionCHROMAT_FILE: MSMg01no369_j15.b1 PHD_FILE: MSMg01no369_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:22 2005CHROMAT_FILE: MSMg01no369_j15.g1 PHD_FILE: MSMg01no369_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,468,666 - 148,468,999)(148,643,689 - 148,644,114)
sequence
ACTACTATATGGAGAGGATCCGCGGAATTCTAAAAGCTGTCTTTTTTTAT
TCAAGACAGAGATCTTCCAGCATAAACACTGGCACTTGTCATGGGCATTT
GTGGCATCTTTTGAAATTTCAAGAGAAATTACATCAAAATAATGAAAAGA
ACAACTTCACTAGAGTAGTGGTCTACATAAAAAAACAAAAAAACAAAACA
AAACAAAAAGCCAAAGCACCACACAGCAAGTGCTGAGCTGGGATTAAGGA
GAGCCTTGCATCCATCTGAGAGTCCTCGGGTCCAGACTTCCTTAATGGAT
AATAGTGTGCAGCACCTTGTCTCAGGTACTGTGAGTTCTTTCACATAAAG
CAACCCAGCAAGGCTTCAGAGGCACCCTATGAGGCAGGCGCCCCCAGTCT
TCAGAGGCACCCTATGAGGCAGGCGCCCATCTTCTCCTACTTTATACATT
CCGAAATAGATTACAAAGCTAAGTACACTGGCCAGATCTCACAGCTAAAC
ATACACTAGGAACACCCCTACCCCCAGGACTGAACATCCCACCCCCTAAA
TAATGACCACCCCGAAGACCCCCCCCTTACCCGACCTCCCCTCCCCACCT
CTGATACATACCGCTCTGCCCTCCCGGCCCCCTGAACCTTCCCTCATTTC
CTTCTCCCCCTCTTCACCCCCTCCCGCTTACTCTTTTTCCCCCCCTTTCC
CTCCCTTTCCACCCTCTTCTTCCCTTTCCTCTTCCCCTCCCCCACTTTCC
CCGCTCCCCCTTCCCTCCCCCCTCTTACCTCC
CATGATANTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGTCAAATGGTCACCTTCGGTTT
GTTTAGGACTGTGGCAGCTACCAACATGAATGAGACAAGCAGCCGTTCTC
ACGCTGTGTTCACCATTGTCTTTACCCAGAAGAAACAGGATCCTGAGACG
AACCTTTCTACTGAGAAGGTGGGAGACTGCGGATCGCTGAGGTTGTGAAG
GGATTCTGTGGAGATCGTCCTTTTACTCGTTGCAGTTTGGACAGGATCAG
TGTTGTTCTCTCCCTTATAGGGAGTGGCTTTTCATTCTACTCACCATTTA
TCTCATGCCAGTTTCTACTGTGCTGGGTCTGCCGTGCAGCTGAAAGATTG
AAAACACAGTTAAGAAAATGTAAAACTTTGGGAAAATATTGTATTTTATG
CAAATCAGTTAAGTGGGTCTGCTGGGGGAAAATACCTTTTCTTCTTGACT
AGACCACAGTAATGTTCTTTGATAAAGCTGCTGCAATGATGTCTGCAGGT
GAATAGGCTGGATGAGTATTCATTCCCGCTGAAATAATTCTGGATCCACC
CCTATTTTGTTTTACCACCTTTTCCCTGCTTGCTTTGCCTTGCTTTTGTC
TTTTGTACACCCGAACCTCGACCCCTCTGTCATGCTCTCTCATTTTTTTG
TTTTTTTTTTCTATCGCCTTACCCTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j15.b1 MSMg01no369_j15.b1 CHROMAT_FILE:
MSMg01no369_j15.b1 PHD_FILE: MSMg01no369_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:22 2005
         (347 letters)



>mm_chr4_148468453_148469199
          Length = 747

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggaattctaaaagctgtctttttttattcaagacagagatcttccagcataaacactggc 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaattctaaaagctgtctttttttattcaagacagagatcttccagcataaacactggc 273

                                                                       
Query: 74  acttgtcatgggcatttgtggcatcttttgaaatttcaagagaaattacatcaaaataat 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acttgtcatgggcatttgtggcatcttttgaaatttcaagagaaattacatcaaaataat 333

                                                                       
Query: 134 gaaaagaacaacttcactagagtagtggtctacataaaaaaacaaaaaaacaaaacaaaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaaaagaacaacttcactagagtagtggtctacataaaaaaacaaaaaaacaaaacaaaa 393

                                                                       
Query: 194 caaaaagccaaagcaccacacagcaagtgctgagctgggattaaggagagccttgcatcc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caaaaagccaaagcaccacacagcaagtgctgagctgggattaaggagagccttgcatcc 453

                                                                       
Query: 254 atctgagagtcctcgggtccagacttccttaatggataatagtgtgcagcaccttgtctc 313
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 454 atctgagagtcctcgggtccagacttccttaatggagaacagtgtgcagcaccttgtctc 513

                                             
Query: 314 aggtactgtgagttctttcacataaagcaaccca 347
           ||||||||||||||||||||||||||||||||||
Sbjct: 514 aggtactgtgagttctttcacataaagcaaccca 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no369_j15.g1 MSMg01no369_j15.g1 CHROMAT_FILE:
MSMg01no369_j15.g1 PHD_FILE: MSMg01no369_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:23 2005
         (426 letters)



>mm_chr4_148643489_148644314
          Length = 826

 Score =  746 bits (386), Expect = 0.0
 Identities = 416/426 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtcaaatggtcaccttcggtttgtttaggactgtggcagctaccaacatgaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcttgtcaaatggtcaccttcggtttgtttaggactgtggcagctaccaacatgaatgag 567

                                                                       
Query: 61  acaagcagccgttctcacgctgtgttcaccattgtctttacccagaagaaacaggatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acaagcagccgttctcacgctgtgttcaccattgtctttacccagaagaaacaggatcct 507

                                                                       
Query: 121 gagacgaacctttctactgagaaggtgggagactgcggatcgctgaggttgtgaagggat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 gagacgaacctttctactgagaaggtgggagactgcggattgctgaggttgtgaagggat 447

                                                                       
Query: 181 tctgtggagatcgtccttttactcgttgcagtttggacaggatcagtgttgttctctccc 240
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctgtggagagcgtccttttattcgttgcagtttggacaggatcagtgttgttctctccc 387

                                                                       
Query: 241 ttatagggagtggcttttcattctactcaccatttatctcatgccagtttctactgtgct 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 386 ttaaagggagtggcttttcattctactcaccatttatctcatgccagttgctactgtgct 327

                                                                       
Query: 301 gggtctgccgtgcagctgaaagattgaaaacacagttaagaaaatgtaaaactttgggaa 360
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 gggtctgctgtgcagctgaaagatagaaaacacagttaagaaaatgtaaaactttgggaa 267

                                                                       
Query: 361 aatattgtattttatgcaaatcagttaagtgggtctgctgggggaaaataccttttcttc 420
           |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 266 aatagtgtattttatgcaaatcagttaagtgggtctgttggggaaaaataccttttcttc 207

                 
Query: 421 ttgact 426
           ||||||
Sbjct: 206 ttgact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)