Query= MSMg01no370_a07.b1 MSMg01no370_a07.b1 CHROMAT_FILE:
MSMg01no370_a07.b1 PHD_FILE: MSMg01no370_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:55 2005
(513 letters)
>mm_chr4_48752987_48753898
Length = 912
Score = 919 bits (475), Expect = 0.0
Identities = 505/523 (96%), Gaps = 15/523 (2%)
Strand = Plus / Plus
Query: 5 gaattctgtacctgggatctacatgatggaagtggagaaccagtttctgccaactgttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattctgtacctgggatctacatgatggaagtggagaaccagtttctgccaactgttct 250
Query: 65 ctgataca--cacacacacacacacacacacacacacacacacacaca------------ 110
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgatacatacacacacacacacacacacacacacacacacacacacatacacacacaca 310
Query: 111 cacacaattttaaaagcttaataaaaatattcttaaaaatacaaacatggatgtaactga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cacacaattttaaaagcttaataaaaatattcttaaaaatacaaacatggatgtaactga 370
Query: 171 tcacaattggtcccctgtctgtctgccatcctcaatttcatcaggagcatgagatgttca 230
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcacaattggtctcctgtctgtctgccatcctcaatttcatcaggagcatgagatgttca 430
Query: 231 ttgaagtgaattgagacaagagttagtggcttggactgtgctttgaactattaattttgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 ttgaagtgaattgagacaagagttagtggcttggactgtgctttgaactattaattt-gt 489
Query: 291 tctttgatcacagattgcctataatgctaggaaatgtgttttaaatagctaaaatgtcct 350
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 490 tctttgatcacagattgcctataatgttaggaaatgtgttttaaatagctaaaatgtcct 549
Query: 351 attagggggtgcttgagagatggttcagtggctaaaaacagtggaagactttatagagga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 attagggggtgcttgagagatggttcagtggctaaaaacagtggaagactttatagagga 609
Query: 411 cctgggtttaattcccagcaacggcatggctgcttacaacagtctgtaactcctgttcca 470
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cctgggtttaattcccagcaatggcatggctgcttacaacagtctgtaactcctgttcca 669
Query: 471 gggtatctaacaccttctcctggcctctgcaggcatcacagca 513
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gggtatctaacaccttctcctggcctctgcaggcatcacagca 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_a07.g1 MSMg01no370_a07.g1 CHROMAT_FILE:
MSMg01no370_a07.g1 PHD_FILE: MSMg01no370_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:55 2005
(528 letters)
>mm_chr4_48842540_48843467
Length = 928
Score = 922 bits (477), Expect = 0.0
Identities = 513/525 (97%)
Strand = Plus / Minus
Query: 4 ggataccaactgcctggaaagaaaagagagatggagatgaaagacaaacttatccataag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggataccaactgcctggaaagaaaagagagatggagatgaaagacaaacttatccataag 669
Query: 64 ctccaaagaactttaggagctggtagcaacaagtgtgtaaagagtatagatgatgtaaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctccaaagaactttaggagctggtagcaacaagtgtgtaaagagtatagatgatgtaaga 609
Query: 124 acaaggcattggctggctgtttctctgaggaacagccaggcatcaggaccaccaccctct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 608 acaaggcattggctggctgtttctctgaggaacagccaggcatcaggaccacctccctct 549
Query: 184 ctcactatccattctacttcaaggactaaacagatgaacaaattaaaccagacagatgct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctcactatccattctacttcaaggactaaacagatgaacaaattaaaccagacagatgct 489
Query: 244 ggttatagtgaagaaaaagtgtcagtcttaaaataggtaaagtctctttctgaataacag 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 488 ggttatagtgaagaaaaagtgtcagtcttaaaataggtaaagtctctttctgaataacgg 429
Query: 304 agtcttcttcagcctcctgcttagacccaggggcacaggaaacaagcatatgactcccaa 363
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 428 agtcttcttcggcctcctgcttagacccaggggctcaggaaacaagcatatgactcccaa 369
Query: 364 cctctagtcagagatatttggagtcctgaatagcctcagaaaaagtcacatatattggga 423
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 368 gctctagtcagagatatttggagtcctgaatagcctcagaaaaagtcacatatgttggga 309
Query: 424 tgtgcaggttcctgaaagaactggccacagaaagcagatgaatacttctaagatgtcaca 483
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgtgcaggttcctgaaagaattggccacagaaagcagatgaatacttctaagatgtcaca 249
Query: 484 aatcttctcagaaacatccaaggaatatggagagtttatcattgt 528
|||||||||||||||||||| |||||| ||||||| ||| ||||
Sbjct: 248 aatcttctcagaaacatccagggaatacagagagttcatcgttgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
