BAC Information

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BAC

Clone NameMSMg01-370C05
Chromosome4 (Build37)
Map Location 91,890,434 - 91,890,601
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C05.T7 (MSMg01no370_c05.b1)MSMg01-370C05.TJ (MSMg01no370_c05.g1)
ACCAG476956AG476957
length754799
length of high quality
(start - end)		494 (43 - 536)168 (73 - 240)
definitionCHROMAT_FILE: MSMg01no370_c05.b1 PHD_FILE: MSMg01no370_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:05 2005CHROMAT_FILE: MSMg01no370_c05.g1 PHD_FILE: MSMg01no370_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTACCAAAATCAAACAAACAACAAAAATGCATAGCCTCCAAACCAGTCA
CAAAAGCTTTGATCTATACTCTGTTTTTCCTGCAAAATATACTAGGCCAA
TAGTGGCACAAAACTTGTGGGAGTAACCATGGATGTTCCATGTAACCTAA
TGCCCACTCAGCAGGGTGGAACTCATTTCTCACACTGCTTAGGTGACCAA
GAACAAGAGACTAGATATAACAGAGACCTTATGTAAAAACAAATACCACT
GGTCTATAAGCATGAGTGATACAATGACTCCTAGTAATTCTAATAACAAA
CTTTTATTCTTATAGATTAATGTCTATTCAGACATCATCAGAGAAGGTTC
CTCCTATAGCACATGGGAAGACAAAAACATACAGAGATCCACAACCAGAC
ATAATATATAGAGGGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGA
ATTATGGGTTATCTTCATTATATGTTTATGTGCGCACATTTGTACATACT
CATACATATATACGTTATGTTACGTATGTCGCGCGCCCCTCCCTCAATTC
TCATCCATCTACTCCCTTTCAATATACAATCCTTACCCATTCTTTGTTCC
TTCTTCTCACGTTACCTCTTTTATCCTTCTTTTGCTCTTCACTATCCCCT
GCATTCTTATTTTTACCCGTTCCTTCTTCTTTACCTCTTTTTCCCTCTCC
TTTG

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAGTGTCCACACTTGAACACCTTTGAA
TACTGGTTGCCAAGTGAATCTTCACTGTGGGTAGGTAAAGAAATGGGGTA
TGGGAGAAGAGGAACCATGGACCGCTGCTATGGACACTTTCAGTATTTAT
TTTTTGGTTTATGATTTTTAAAGAGACCCTTTGGGGAAAAAAGGTAAAAT
ACCCACTATATAATATAATAAAACTAAAATAACGCTATTACTGTCTAGTA
TCCGGTAGATCTTCTAATACATATTTCTATATGAACTACTGTTAATGTTG
TGAATGACTTATTCCTTGGTGTATAATATTCTTATCTCTGTGTCCGCCCC
CCCTATCCTCCCTCTCGCACCTCCCTTTTTCTTCTTTCTTTCCTCCCCTT
TCCCCTTTTTCCCCCCCTCCCTTTTTTTCTGCTTTGTTTCTCCCCCCGCC
CCCCTTTAACTCCCTTCCTCTCCTTCCTCCTTCTTTTTTCTTTTTCTCTT
TCCTCTTCCCGTCCTTCCCTTCTTTTCCCCCTCCTCCCTTTCTCCTTCTT
TCTCCTTCTTTTTTTTCCCCCCCCTCTCTCTCCCCCCTTTCTCTCCTCCC
TCTTCTCTCCCTTTCTCTCTCCTTCTTCCCTTTTCTCCCCTCCTTTTCCC
CCTCGCTTCTTTTGTTCCCCCTTCTCCTTTTTCGCATCATTTCCTGCCCC
GCCCCTCCCGTCCGTTTTTTCTCTCCCTCCCCCTTTTTCTCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c05.g1 MSMg01no370_c05.g1 CHROMAT_FILE:
MSMg01no370_c05.g1 PHD_FILE: MSMg01no370_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:05 2005
         (168 letters)



>mm_chr4_91890234_91890801
          Length = 568

 Score =  302 bits (156), Expect = 9e-87
 Identities = 165/168 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtgtccacacttgaacacctttgaatactggttgccaagtgaatcttcactgtgggt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagtgtccacatttgaacacctttgaatactggttgccaagtgaatcttcactgtgggt 260

                                                                       
Query: 61  aggtaaagaaatggggtatgggagaagaggaaccatggaccgctgctatggacactttca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 aggtgaagaaatggggtatgggagaagaggaaccatggaccgctgctatggacactttcc 320

                                                           
Query: 121 gtatttattttttggtttatgatttttaaagagaccctttggggaaaa 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttattttttggtttatgatttttaaagagaccctttggggaaaa 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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