BAC Information

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BAC

Clone NameMSMg01-370F05
Chromosome4 (Build37)
Map Location 146,987,441 - 146,987,863
singlet/doubletsinglet
Overlap gene2610305D13Rik
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
Downstream geneLOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370F05.T7 (MSMg01no370_f05.b1)MSMg01-370F05.TJ (MSMg01no370_f05.g1)
ACCAG477100AG477101
length777763
length of high quality
(start - end)		427 (41 - 467)409 (71 - 479)
definitionCHROMAT_FILE: MSMg01no370_f05.b1 PHD_FILE: MSMg01no370_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:20 2005CHROMAT_FILE: MSMg01no370_f05.g1 PHD_FILE: MSMg01no370_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTCATGATTACTAAGAAGGGATTGTTGCATAAAGCATTTGTTACATTCA
ATGCATTTGTAAGTTTTCTCTCCTGTATGAATTCTCTGATGCATACTAAG
ATTGAATTTGTGTTTAAAACATTTGTCACTTTCATTACATTTATAAAATT
TCTCTCCAGTATGAATTTTCTGATGGATACCAAGATAGAATTTTTGTGTA
AAGCATTTGTCACTTTCACTATATTTGTAAGATTTCTTTCCTGGATAAAT
TCTCTGCTGACTTTGAAGATTGTCACTCTGAGTAAAGCATTTGTCAAATT
CACCACAAGTGTAAGTGTTCATTTCACTATTGTTTTGTCTCACAATGGGT
TTATGTTTAGAAACCAAAACCTCATCAAGATTTTTATTTCTGTTGTGTTC
TTTCTTCTCTATGTGGGTTCCTTGATTGAGACTAATGATAGAAGACACCT
TTAAACGGTTTACACAGTCTTTATACGCGCAAACTTCTTTATTGCTCCCA
GTCTCATGTCTTTCTATGTTCGAACATTGCATATCGCCCCCCTTCTCGGT
TCTATTTCTTTGACGACCCACATGCCTAATTATTCCCCTCTTTCATCCGT
CACTCCCTTTTCTCCTCTTACAACCTCTTCTTCTATATTCCTACCCTTAA
CTGTTCACTTTCCCCCCATTGCTCTATTCACATATACCTTCTATTTTCCC
ATTCCCTTTTTTCCTCACCTTCTAACN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAATGCAGTG
AATGTGACAAATGCTTTACTGAAAAAGGCAGTCTGAGAATTCATCAGAGA
ATTCATACAGGAGAGAAACCTTACAAATGCAGTGGATGTGACAAATGCTT
TACTAAAAAAAGCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGA
AACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTACAAAAGGCAAT
CTGATAATTCATCAGAGAATTCATACAAGAGAGAAACCTTACAAATGTAG
TGAATGTGACAAATGCTTTACCCACAAATGCCATCTTAATAATCATCAGA
AAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGC
TTTACTGAAAAAGGCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGA
GAAACCTTTAAAATGCCGTGGATGTGACAAATGCTTTACTCAAAAAAGCA
GTCTGAGAATTCATCAGAGAATTCTCCCAGGAGAGAAACCTTACAAATGC
AGTGAATGTGGACAATGTTTTACTAAAAAAGGGCATCTGATAATTCTTCC
TAAAATTCCATTAGAGAGATCCTCTCCAACGCTTGGAATGCCGCAATTGT
TTTTCCCCAACACCCCCTTTATTATTTTCTCAAATATTTTCTGGTTGAGA
AACTTTTCTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_f05.b1 MSMg01no370_f05.b1 CHROMAT_FILE:
MSMg01no370_f05.b1 PHD_FILE: MSMg01no370_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:20 2005
         (427 letters)



>mm_chr4_146987237_146988063
          Length = 827

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcatgattactaagaagggattgttgcataaagcatttgttacattcaatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcatgattactaagaagggattgttgcataaagcatttgttacattcaatgc 264

                                                                       
Query: 65  atttgtaagttttctctcctgtatgaattctctgatgcatactaagattgaatttgtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgtaagttttctctcctgtatgaattctctgatgcatactaagattgaatttgtgtt 324

                                                                       
Query: 125 taaaacatttgtcactttcattacatttataaaatttctctccagtatgaattttctgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaacatttgtcactttcattacatttataaaatttctctccagtatgaattttctgat 384

                                                                       
Query: 185 ggataccaagatagaatttttgtgtaaagcatttgtcactttcactatatttgtaagatt 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggataccaagatagaacttttgtgtaaagcatttgtcactttcactatatttgtaagatt 444

                                                                       
Query: 245 tctttcctggataaattctctgctgactttgaagattgtcactctgagtaaagcatttgt 304
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttaatggataaattctctgctgactttgaagattgtcactctgagtaaagcatttgt 504

                                                                       
Query: 305 caaattcaccacaagtgtaagtgttcatttcactattgttttgtctcacaatgggtttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaattcaccacaagtgtaagtgttcatttcactattgttttgtctcacaatgggtttat 564

                                                                       
Query: 365 gtttagaaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctctatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttagaaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctctatgt 624

              
Query: 425 ggg 427
           |||
Sbjct: 625 ggg 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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