BAC Information

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BAC

Clone NameMSMg01-370J10
Chromosome4 (Build37)
Map Location 81,402,536 - 81,402,892
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131, LOC100040144
Downstream geneEG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J10.T7 (MSMg01no370_j10.b1)MSMg01-370J10.TJ (MSMg01no370_j10.g1)
ACCAG477300AG477301
length831787
length of high quality
(start - end)
317 (43 - 359)357 (73 - 429)
definitionCHROMAT_FILE: MSMg01no370_j10.b1 PHD_FILE: MSMg01no370_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:41 2005CHROMAT_FILE: MSMg01no370_j10.g1 PHD_FILE: MSMg01no370_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAA
ATGCTTTTTCTGCATCCAATGAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCC
CTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAA
TGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCG
ATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTT
CTGTGGTTTAGGTATCATAGTAATACTGCCTCCATAAAATGATTTGCGCT
ATAGTACTTCCCCACCCCCATCTTGTGATTTATGTTTGTCCTNATATCTC
CATTTCATTTTTCTTTTTACCGTCTTCCATTATCTCTTCCTCTTCCTCCC
TTTTTCCCCCTTTTTCCTCTTCCTCTTTTCTTTCACTCATTACTTTTACT
CGTTTTTCACTCTTCTTTCTTCCCATTACTACTTTTACCCTCTCATCTCC
CTTTTTTTTATTCCCTCCCATTTTTTCTTTCCTTCCCTTTTCCCCCTTCC
CCCCTCTTTTTTTTCTTCCTTTCTCTCTATTTTTCTTCCCTTTTTTTTTC
TCCCTTTTTTTCTCTTTTTTTTTTTAACTCCTTCCTTTCCTTTTCTCTTT
AATTTACCCTCTGTACTTCTTTCTCTCTCCCTCCTATTCCCTTCCCTTTC
CTCCTATTTTTACCTCACATTTTATCCTTTT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGGAGCTCCCAGAGACTGCCACCAACC
AGGTAGTATACATGAGCTAGTCCCAGGGCCCTGACACATATATAAAAGAG
GTCTGCCTGGCCTGATCTCAGTAGGAAAAGATGTGCCTAATCCTTGAGAG
ACCTGAGGACCCAGGGAAGGGGAAGACCTGGAGGGAGCACCTTCTCAGAG
GCAAGGGGGAGGAGCAGTGGGATGAGAAACTGTGGGAGGCGGGACTGTAA
ATAAATAAAATATTTTTAAAATGTCTATTCCATGAGCTTTATATTTTTAT
ATGATTGTATAATCAGATTTTTAATTTGCACATAAAGAAATGCTGGATCT
GGACTGAGATTTTTGCTGAAAGCATTGATCAGTTTGACCAGACTACAGGA
GTAACTTGTCTAGGTTCTTCTGCAGTGGGAACCTCTGTGGTCCTTCCCTC
ACTTTCTTATAAGCGAATTCTTTCTTTCCTTCCCTTTTTCACCGAGTTAT
TTCCCTTCTTTTTTTTTTACACTGTTTTTCCGCCCTTTTTCGCCCCTTTT
ATCGTTCCGCTCCTTCTCTTTTTTTCCCCCCTCCCTCTTTTTTTTCCTTC
CCTCTTTACTTCTTCTCTTTTTTTCTTTCGTTTTTTTCCCCTTTTCTTTT
TCCTTTCCTTTTTCTTCCCCTTCTCTTCCCTGTTTCCTTCTCTGTTTTCT
TAATCCTCTTTTATTCGTTATTCTTTTTTCCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j10.g1 MSMg01no370_j10.g1 CHROMAT_FILE:
MSMg01no370_j10.g1 PHD_FILE: MSMg01no370_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:42 2005
         (357 letters)



>mm_chr4_81402336_81403092
          Length = 757

 Score =  690 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggagctcccagagactgccaccaaccaggtagtatacatgagctagtcccagggccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggagctcccagagactgccaccaaccaggtagtatacatgagctagtcccagggccct 260

                                                                       
Query: 61  gacacatatataaaagaggtctgcctggcctgatctcagtaggaaaagatgtgcctaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacatatataaaagaggtctgcctggcctgatctcagtaggaaaagatgtgcctaatc 320

                                                                       
Query: 121 cttgagagacctgaggacccagggaaggggaagacctggagggagcaccttctcagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgagagacctgaggacccagggaaggggaagacctggagggagcaccttctcagaggc 380

                                                                       
Query: 181 aagggggaggagcagtgggatgagaaactgtgggaggcgggactgtaaataaataaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggggaggagcagtgggatgagaaactgtgggaggcgggactgtaaataaataaaata 440

                                                                       
Query: 241 tttttaaaatgtctattccatgagctttatatttttatatgattgtataatcagattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttaaaatgtctattccatgagctttatatttttatatgattgtataatcagattttt 500

                                                                    
Query: 301 aatttgcacataaagaaatgctggatctggactgagatttttgctgaaagcattgat 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttgcacataaagaaatgctggatctggactgagatttttgctgaaagcattgat 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)