Query= MSMg01no371_l10.b1 MSMg01no371_l10.b1 CHROMAT_FILE:
MSMg01no371_l10.b1 PHD_FILE: MSMg01no371_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:16 2005
(418 letters)
>mm_chr4_63163584_63164405
Length = 822
Score = 768 bits (397), Expect = 0.0
Identities = 414/421 (98%), Gaps = 4/421 (0%)
Strand = Plus / Plus
Query: 1 tgtccttgcttccatggctgactgatggctttctctgactggttccaggctcttaatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtccttgcttccatggctgactgatggctttctctgactggttccaggctcttaatatc 260
Query: 61 tcttcccctctggctttcaaatagcagctaatgatcctagctgcctctctgctggtcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcccctctggctttcaaatagcagctaatgatcctagctgcctctctgctggtcctg 320
Query: 121 tgatttctgcctttgcctttgaccgtcttcaaaggcactcagaagacactgttattacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatttctgcctttgcctttgaccgtcttcaaaggcactcagaagacactgttattacat 380
Query: 181 ttacggggcccagtgtgctcccccacccaagtacttggcaaattgtgtcaaagactctct 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacagggcccagtgtgctcccccacccaagtacttggcaaattgtgtcaaagactctct 440
Query: 241 cgctgttacagaagaatgcttgctcccttgcactt---tattccttagaaatttgatatt 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 cgctgttacagaagaatgcttgctcccttgcacttctttattccttagaaatttgatatt 500
Query: 298 ctcattgacttactgtgaaggtcacaagaaatggagtttcagcattctaaaactgcagtt 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcattgacttaccgtgaaggtcacaagaaatggagtttcagcattctaaaactgcagtt 560
Query: 358 ctttttttaaccttaaaaaa-tcatatttctttttcattcactaaatatttagtgcttac 416
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctttttttaaccttaaaaaaatcatatttctttttcattcactaaatacttagtgcttac 620
Query: 417 t 417
|
Sbjct: 621 t 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 822
Length adjustment: 9
Effective length of query: 409
Effective length of database: 813
Effective search space: 332517
Effective search space used: 332517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_l10.g1 MSMg01no371_l10.g1 CHROMAT_FILE:
MSMg01no371_l10.g1 PHD_FILE: MSMg01no371_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:16 2005
(316 letters)
>mm_chr4_63346411_63347124
Length = 714
Score = 561 bits (290), Expect = e-164
Identities = 306/312 (98%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 5 gaattcacacatcgatctctgcccttgaagataagtccaaagggtttcaaagcaaatccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcacacatcgatctctgcccttgaagataagtccaaagggtttcaaagcaaatccc 455
Query: 65 cttcacgcacaagtgaactacatcaattggaacaaagtttacttaagacatctgacagtc 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cttcatgcacaagtgaactacatcaattggaacaaagtttacttaagacatctgacagtc 395
Query: 125 ccattttgccatattaattaaagccagagagatgggaaatgtggtgggtctttacaatag 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccattttgccatattaattaaagtcagagagatgggaaatgtggtgggtctttacaatag 335
Query: 185 ggacagagtgctccttttgattttttttttttactatctggtctcttcaaacggaaatca 244
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 334 ggacagagtgctccttttga--ttttttttttaatatctggtctcttcaaacggaaatca 277
Query: 245 taggaaagaatacatcccacatggcagacggtaagctctgtcctcaggaaaaaacatggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taggaaagaatacatcccacatggcagacggtaagctctgtcctcaggaaaaaacatggg 217
Query: 305 gtgggggggatg 316
||| ||||||||
Sbjct: 216 gtgagggggatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 714
Length adjustment: 9
Effective length of query: 307
Effective length of database: 705
Effective search space: 216435
Effective search space used: 216435
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
