BAC Information

Click to search

BAC

Clone NameMSMg01-372A04
Chromosome4 (Build37)
Map Location 138,739,111 - 138,739,561
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4
Downstream gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372A04.T7 (MSMg01no372_a04.b1)MSMg01-372A04.TJ (MSMg01no372_a04.g1)
ACCAG478377AG478378
length727744
length of high quality
(start - end)
626 (39 - 664)451 (74 - 524)
definitionCHROMAT_FILE: MSMg01no372_a04.b1 PHD_FILE: MSMg01no372_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:40 2005CHROMAT_FILE: MSMg01no372_a04.g1 PHD_FILE: MSMg01no372_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCGGAATT
CTCTTTTTTCCTCTCATTTGCTGAGGGAATAAACACACATGTGCTATAGC
AAGCAAATCAAGAATGGGCATCTGAGTCCTCCTAGCACTTGGGAGATAAA
GGCAGAGCGAGCTCTTTGAGTTCAAAGCCAGCCTGATTTACATATTCCAG
GATAGCCAGAGCTAGCGAGACCTCAAAAAAAGGAGGGTGGAGGGCACTGG
AATAGAGAGATGGCACTGGCTGACCTTCCAGTGCACCTAAATTCAATCCC
CAGCACCCATATGGCTCACAGCTGGCTGGTAATCCAGTTCTAAGGGATCC
AACACCCTCTTCTGGCCTCCAAAGAGACTGCACTCACGTGGACCACAGAC
ATACAAGTGGGCAAAACACCCATACACATAAGAAAAAAGCTTTAAGGGCT
GGCGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCC
AGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGA
GATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAATGTACTTAC
ACATAATCAATAAAAAATAAATCTTAACAAGAAAAAAGCTTTAAAGGATG
GGCATCTATGTCTCTTCAGTGGTCTCTGAGGGAGGGGAAAAAAAGCCCAA
TGGCCCAGTTGCTGTCTATGCAGGTCC
ATGCAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGGCTACATAGTTAGATTGTCTCAG
AACAACAAAAAAAAATTACACGTAGTAAGCACCCATTTAAAAAAAAAAAA
AGCTGGCAAAGCTTCATTATCCAATTCCCAAACGCTGACTTATAGTCATG
GTGTTATCATGTTGATATATGTTCATGTTGATATATGCATTCATCGAGCA
CCCACCACGTTCTACGTGCTAAAGACTTACATGCAGAAAGCATACATCCG
GAAGGGGAAGTTCAGAGGGAATGGAGGTCGCATTGGGAAAGGTTGTAGCA
GACACCAGAAGTAAGGTGCAGTAAAGTGAGCGGAGGCACAAAGAGGCTAC
TGATTTCTGCAAGATGAAATTCCTGGCTGGAGAAATGGCTCAGCGGTTAA
GAGCACTGACTGCTCCTCCAAAGGTCCTGAGTTCAAGTCCCAGCAACCCC
ATGGTGGCTCACAACTATCTGAGATCTGGTGCCCTCTTCTGGGGTGTCTG
AAGACAGCTACAGTGTACTTACATATAATAAATAAGTCTTTAAAGGAAAA
AAAATACCCACGTAACCTTATAAGGTATGAAGTCTGTGGGCAAGTTGGGG
TTGGTACAACCCTACCCCCTGAGGCGAATCTAAACGTAATGCAGAATCCT
CTCTACCANTGGGTGTGTGTGGTGCGTGTGGAGAGTGCCATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_a04.g1 MSMg01no372_a04.g1 CHROMAT_FILE:
MSMg01no372_a04.g1 PHD_FILE: MSMg01no372_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:40 2005
         (451 letters)



>mm_chr4_138738911_138739761
          Length = 851

 Score =  872 bits (451), Expect = 0.0
 Identities = 451/451 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggctacatagttagattgtctcagaacaacaaaaaaaaattacacgtagtaagcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggctacatagttagattgtctcagaacaacaaaaaaaaattacacgtagtaagcacc 260

                                                                       
Query: 61  catttaaaaaaaaaaaaagctggcaaagcttcattatccaattcccaaacgctgacttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttaaaaaaaaaaaaagctggcaaagcttcattatccaattcccaaacgctgacttat 320

                                                                       
Query: 121 agtcatggtgttatcatgttgatatatgttcatgttgatatatgcattcatcgagcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcatggtgttatcatgttgatatatgttcatgttgatatatgcattcatcgagcaccc 380

                                                                       
Query: 181 accacgttctacgtgctaaagacttacatgcagaaagcatacatccggaaggggaagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacgttctacgtgctaaagacttacatgcagaaagcatacatccggaaggggaagttc 440

                                                                       
Query: 241 agagggaatggaggtcgcattgggaaaggttgtagcagacaccagaagtaaggtgcagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagggaatggaggtcgcattgggaaaggttgtagcagacaccagaagtaaggtgcagta 500

                                                                       
Query: 301 aagtgagcggaggcacaaagaggctactgatttctgcaagatgaaattcctggctggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgagcggaggcacaaagaggctactgatttctgcaagatgaaattcctggctggaga 560

                                                                       
Query: 361 aatggctcagcggttaagagcactgactgctcctccaaaggtcctgagttcaagtcccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatggctcagcggttaagagcactgactgctcctccaaaggtcctgagttcaagtcccag 620

                                          
Query: 421 caaccccatggtggctcacaactatctgaga 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 caaccccatggtggctcacaactatctgaga 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)