BAC Information

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BAC

Clone NameMSMg01-372B21
Chromosome4 (Build37)
Map Location 148,049,762 - 148,226,826
singlet/doubletdoublet
Overlap geneLOC100041733, LOC100041742, LOC100041755, Casz1
Upstream geneLOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
Downstream genePex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372B21.T7 (MSMg01no372_b21.b1)MSMg01-372B21.TJ (MSMg01no372_b21.g1)
ACCAG478456AG478457
length768779
length of high quality
(start - end)		505 (60 - 564)388 (66 - 453)
definitionCHROMAT_FILE: MSMg01no372_b21.b1 PHD_FILE: MSMg01no372_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:47 2005CHROMAT_FILE: MSMg01no372_b21.g1 PHD_FILE: MSMg01no372_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,049,762 - 148,050,266)(148,226,439 - 148,226,826)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACAG
AGTTCTCCGAGCCCATCCCGAGGGAGCCTGCCTACATCAGAGAGGAGTTT
CCGCCATTCACAAAGTCCTTCATGAGCAGCCTGGCTGAAGAGGGGTTGAT
TTTCCACCCTGACCCCAAGAGACCTCAGGAGAGACCCATAGTCAAGGCTG
AGAAACCTTTGCAGAATGACCATGGTCCCTCTGGAGAGGAGACCAGACAC
TACCTCGACCTGTCAACTTCAGAACCAAGCCAGGAAATGAAAGAGCTGGG
GGTGGATGCCACATTCACCACCTCAAGAAGGAGGCAGCCAGATGCCAGGG
CCTATCTGGGGACCTCACGTCCAGAGCTCACTGGGAGACCCAGGGTGGGC
ACAGCAGCTCTCCAGACAACACTTCACAAGGGCCTTCTGGCTTCCACTTC
TGAGAGGCCTGCAGCCCCTTCTGAAGGAGCCCTACAGCTAGAGTCAGCAC
CTTCGTGGCCTGAGGGCTGGCATGATCTGGGGGCTGCACACACAGCCAGT
CCCCTGTCTTCACATACCCACAGCCCTCTGGTTCCTACACAAGCCATGTT
TCCCGGCTCCGATGAGCCTGGGAACAGCCTTCCTGGGAGCCAGGTGTCAG
TGAAATCCCGATTGCTCCCCCACACTGATATCCCCCAGACTCTCTGACCT
TTAGGAAGGGCGGATGGGTTCTTTTTAAAGCCCTTGTGTTGTGGAACTCC
TGGCTGAGCTTATATAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCACCCGGAAACCAGGCTCAAGGCTGTACCTAGT
ACTAACTCAAGAACGGACAGGCAGCCTGCTCCAGGCTGGCCTGAGCCCAG
GATGTCCCCAGCCCAGCCTGATCTCCCACCACCTCTTGCGATACTCTCGC
CCGACATGTAGAGAATAAAGCTGAAGCTCTTATCTTCGTGGGTTTGCTTT
GCCAAGGCTGAGTAAAGCTATGGAGAAGTGGGTGAGCCCTGGCTAGGCCA
AGGTGGCCAAGGCGGTGGAGAGAACTGTGTGGTCTTGGGCATCTAAGGAA
ACCTGGATGAGGGGCTGAGAAAGCACCCAGTAAGTGCCACAGAGGCCAAA
GTCCCTGAACAGGAGACCCTGGAGTTTCAGGAGTGCACTGATTCCTCGGG
GCGGAGAGACAGCAAGTAAGAGCCTGGTAGAAATCATAGGATCCCAGGGA
TTTAGGAGCATCCTGTCCAGCAGTTTCCAGGCAAACTATTCCTTGACGCT
GGAGGCCCTTTTGAACCATGTGACTTTGACTGCATTTTACCGCGAATTCT
TCTTCGGTCCGGTTGCCCCATCCTAACCCGACATAAATTGCCCCTTTTTA
TTGTTTTTTCCCCCTTTCTATTCTTATACCGGTTCTTTTTTTTCGCATTT
TTTTTTTTTTTTTTTTTACCTCCTCTATTTAACACCCCCCCCCCTTTTTT
TTTATTTACCCTTCTCTTTTTCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_b21.b1 MSMg01no372_b21.b1 CHROMAT_FILE:
MSMg01no372_b21.b1 PHD_FILE: MSMg01no372_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:47 2005
         (505 letters)



>mm_chr4_148049562_148050466
          Length = 905

 Score =  977 bits (505), Expect = 0.0
 Identities = 505/505 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccatcccgagggagcctgcctacatcagagaggagtttccgccattcacaaagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccatcccgagggagcctgcctacatcagagaggagtttccgccattcacaaagtcct 260

                                                                       
Query: 61  tcatgagcagcctggctgaagaggggttgattttccaccctgaccccaagagacctcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgagcagcctggctgaagaggggttgattttccaccctgaccccaagagacctcagg 320

                                                                       
Query: 121 agagacccatagtcaaggctgagaaacctttgcagaatgaccatggtccctctggagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagacccatagtcaaggctgagaaacctttgcagaatgaccatggtccctctggagagg 380

                                                                       
Query: 181 agaccagacactacctcgacctgtcaacttcagaaccaagccaggaaatgaaagagctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaccagacactacctcgacctgtcaacttcagaaccaagccaggaaatgaaagagctgg 440

                                                                       
Query: 241 gggtggatgccacattcaccacctcaagaaggaggcagccagatgccagggcctatctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtggatgccacattcaccacctcaagaaggaggcagccagatgccagggcctatctgg 500

                                                                       
Query: 301 ggacctcacgtccagagctcactgggagacccagggtgggcacagcagctctccagacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacctcacgtccagagctcactgggagacccagggtgggcacagcagctctccagacaa 560

                                                                       
Query: 361 cacttcacaagggccttctggcttccacttctgagaggcctgcagccccttctgaaggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttcacaagggccttctggcttccacttctgagaggcctgcagccccttctgaaggag 620

                                                                       
Query: 421 ccctacagctagagtcagcaccttcgtggcctgagggctggcatgatctgggggctgcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctacagctagagtcagcaccttcgtggcctgagggctggcatgatctgggggctgcac 680

                                    
Query: 481 acacagccagtcccctgtcttcaca 505
           |||||||||||||||||||||||||
Sbjct: 681 acacagccagtcccctgtcttcaca 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_b21.g1 MSMg01no372_b21.g1 CHROMAT_FILE:
MSMg01no372_b21.g1 PHD_FILE: MSMg01no372_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:48 2005
         (388 letters)



>mm_chr4_148226239_148227026
          Length = 788

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccacccggaaaccaggctcaaggctgtacctagtactaactcaagaacggacaggcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tccacccggaaaccaggctcaaggctgtacctagtactaactcaagaacggacaggcagc 529

                                                                       
Query: 61  ctgctccaggctggcctgagcccaggatgtccccagcccagcctgatctcccaccacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctgctccaggctggcctgagcccaggatgtccccagcccagcctgatctcccaccacctc 469

                                                                       
Query: 121 ttgcgatactctcgcccgacatgtagagaataaagctgaagctcttatcttcgtgggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgcgatactctcgcccgacatgtagagaataaagctgaagctcttatcttcgtgggttt 409

                                                                       
Query: 181 gctttgccaaggctgagtaaagctatggagaagtgggtgagccctggctaggccaaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gctttgccaaggctgagtaaagctatggagaagtgggtgagccctggctaggccaaggtg 349

                                                                       
Query: 241 gccaaggcggtggagagaactgtgtggtcttgggcatctaaggaaacctggatgaggggc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gccgaggcggtggagagaactgtgtggtcttgggcatctaaggaaacctggatgaggggc 289

                                                                       
Query: 301 tgagaaagcacccagtaagtgccacagaggccaaagtccctgaacaggagaccctggagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgagaaagcacccagtaagtgccacagaggccaaagtccctgaacaggagaccctggagt 229

                                       
Query: 361 ttcaggagtgcactgattcctcggggcg 388
           ||||||||||||||||||||||||||||
Sbjct: 228 ttcaggagtgcactgattcctcggggcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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