Query= MSMg01no372_b24.b1 MSMg01no372_b24.b1 CHROMAT_FILE:
MSMg01no372_b24.b1 PHD_FILE: MSMg01no372_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:48 2005
(479 letters)
>mm_chr4_107893141_107894019
Length = 879
Score = 808 bits (418), Expect = 0.0
Identities = 461/480 (96%), Gaps = 13/480 (2%)
Strand = Plus / Minus
Query: 6 gaattccaggactgtcc-ggtctatgtattcaggctagccagggttacacagtgagattt 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattccaggactg-cctggtctatgtattcaggctagccagggttacacagtgagattt 754
Query: 65 tatttaaaaaccaaaccaaaccaaataagatcaagccgacctgaggcaggataggcgaca 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 753 tatttaaaaaccaaaccaaaccaaataagatcaagccgtcctgaggcaggataggcgaca 694
Query: 125 ggcacat---ctccacct--aggaaccctcatctccgaggcctctcagcagaggagcagg 179
||||||| | | ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 693 ggcacatggg----a--tgaaggaaccctcatctctgaggcctctcagcagaggagcagg 640
Query: 180 aatccagcgcagttaattaccaactgcttatggcctttccctctgcccagttctaaacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aatccagcgcagttaattaccaactgcttatggcctttccctctgcccagttctaaacct 580
Query: 240 gcagctctctcagaatctcaccagaaacagaagggacagttgttggttgtcatggtttta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcagctctctcagaatctcaccagaaacagaagggacagttgttggttgtcatggtttta 520
Query: 300 ccttctccagccaatgcagggcccaaaccacctcagttatcaaaaggggtgggagtgttt 359
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cctcctccagccaatgcagggtccaaaccacctcagttatcaaaaggggtgggagtgttt 460
Query: 360 cttagccgtcctttgagatggaacttgagagctgtcaaaacagtgtatatggctaatgct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cttagccgtcctttgagatggaacttgagagctgtcaaaacagtgtatatggctaatgct 400
Query: 420 atgacaattagttgtagccatacctggataagtcttcctttttgagagtcctccttttaa 479
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 399 atgacaattggttgtagccatacctggataagtcttcctttctgagagtcctccttttaa 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_b24.g1 MSMg01no372_b24.g1 CHROMAT_FILE:
MSMg01no372_b24.g1 PHD_FILE: MSMg01no372_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:48 2005
(428 letters)
>mm_chr4_107740903_107741730
Length = 828
Score = 692 bits (358), Expect = 0.0
Identities = 395/428 (92%), Gaps = 32/428 (7%)
Strand = Plus / Plus
Query: 1 aataagaccatttcaaccacttaaccagaggcctgaactagaggcacagcaaagaagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataagaccatttcaaccacttaaccagaggcctgaactagaggcacagcaaagaagaag 260
Query: 61 ggcaaatccactggggaagaaattcacagttcgtccagcggctgcagggtagggtgggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaatccactggggaagaaattcacagttcgtccagcggctgcagggtagggtgggtg 320
Query: 121 cactccagtagttttctgaactctaaagtgaatgctttcaatatttcctaagtgatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactccagtagttttctgaactctaaagtgaatgctttcaatatttcctaagtgatgaaa 380
Query: 181 aggttaacaggtagtgtgatcaaaaacttagaaggctgctctttctggtcacctctccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttaacaggtagtgtgatcaaaaacttagaaggctgctctttctggtcacctctccct 440
Query: 241 ctttgcctggaaaacaaccaccaataaataaataaataaataaataaataaataaataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgcctggaaaacaaccaccaataaataaataaataaataaataaa------------ 488
Query: 301 taaataaataaataaataaaaccccacaaaacaaaagtgacaccatctacaaatggtgct 360
||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 --------------------accccacaaaacaaaagtgacaccatctacaaatggtgct 528
Query: 361 taactagttttctaaattcctgctctaactgctaaaaaccagtggtgagtattaacgaca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 529 taactagttttctaaattcctgctctaactgctaaaaaccagtggtgagtattaacaaca 588
Query: 421 cataagcc 428
||||||||
Sbjct: 589 cataagcc 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
