Query= MSMg01no372_c20.b1 MSMg01no372_c20.b1 CHROMAT_FILE:
MSMg01no372_c20.b1 PHD_FILE: MSMg01no372_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:52 2005
(627 letters)
>mm_chr4_29188851_29189877
Length = 1027
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Minus
Query: 10 gaattcacatgtttccgtggaagataaagaaattaccatatgtgcccagtaagcaaaaag 69
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattcacatgtttctgtggaagataaagaaattaccatatgtgcccagtaagcaaaaag 437
Query: 70 aataacctgaaaaaaagaagccaaaagtacctatgtacagattgtacaaggtagataata 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 aataacctgaaaaaaagaagccaaaactacctatgtacagattgtacaaggtagataata 377
Query: 130 aagaaatagcatagctaatataatgaaaatagcaagaataaaccagcacagttttcttgc 189
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 aagaaatagcatagctaatataataaaaatagcaagaataaaccagcacagttttcttgc 317
Query: 190 tatgaggactctgataaagtatgtattcaataaaacagattaaagacaaaaaaattagga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatgaggactctgataaagtatgtattcaataaaacagattaaagacaaaaaaattagga 257
Query: 250 aaaaaaaacggagtgaaaaattagaatgctatgcagttatgcagtcatgtcttctggcca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaaaaaaacggagtgaaaaattagaatgctatgcagttatgcagtcatgtcttctggcca 197
Query: 310 tgtcatggctctctcattcatgaactaactaaccagtgtggttgtctgtattttctaaaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgtcatggctctctcattcatgaactaactaaccagtgtggttgtctgtattttctaaaa 137
Query: 370 ataacacaaattacatttaaaatttggatttttactaattttacttacttctactatggc 429
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ataaaacaaattacatttaaaatttggatttttactaattttacttacttctactatggc 77
Query: 430 tattggaaaatgttcttgccaaaagagaaatcatatgatttgtaaacatatttattacag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tattggaaaatgttcttgccaaaagagaaatcatatgatttgtaaacatatttattacag 17
Query: 490 tttttatgacttactt 505
||||||||||||||||
Sbjct: 16 tttttatgacttactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_c20.g1 MSMg01no372_c20.g1 CHROMAT_FILE:
MSMg01no372_c20.g1 PHD_FILE: MSMg01no372_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:52 2005
(487 letters)
>mm_chr4_29009807_29010694
Length = 888
Score = 857 bits (443), Expect = 0.0
Identities = 479/495 (96%), Gaps = 9/495 (1%)
Strand = Plus / Plus
Query: 1 ctttggattttttttttcaaaagaagcttcattttaaatttcattgaaaaatgataattg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctttggattttttttt-caaaagaagcttcattttaaatttcattgaaaaatgataattg 253
Query: 61 catgtatttatgtgatacaaagtgatgctttgaaacatgaaacatgaaacat-------t 113
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 254 catgtatttatgtgatacaaagtgatgctttgaaacatgaaacatgaaacatgaaacatt 313
Query: 114 atgacattcaatgtgacatcgggtttgacctcactctggctataagaaccaactctgagt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgacattcaatgtgacatcgggtttgacctcactctggctataagaaccaactctgagt 373
Query: 174 acgatggaagattgtatgaacaagagaatactttttttacttccttgttttgtgttcttt 233
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 374 acgatggaagattgtatgaacaagagaatactttttttacttccttgttttatgttcttt 433
Query: 234 gttgtgtctcttttaagtaagtcacacccagttgaatatttttttaagctctattagtat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gttgtgtctcttttaagtaagtcacacccagttgaatatttttttaagctctattagtat 493
Query: 294 agatatgaatcatgcctttaaaatccttagagttttaaaacaacaaagaaagagaatggc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agatatgaatcatgcctttaaaatccttagagttttaaaacaacaaagaaagagaatggc 553
Query: 354 aagatcagttttagtctactttggtttcgtcaccaagttttgtctgaaactcagtttcta 413
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 554 aaaatcatttttagtctactttggtttcgtcaccgagttttgtctgaaactcagtttcta 613
Query: 414 agcttgggtgagcgcatcaggaagca-ttgatgagaagaccacatctgtcctctcagagg 472
|||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 614 agcttgggtgagtgcatcaggaagcaattgatgaaaagaccacatctgtcctctcagagg 673
Query: 473 gcaaaggggaaaatg 487
| |||||||||||||
Sbjct: 674 gaaaaggggaaaatg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 888
Length adjustment: 10
Effective length of query: 477
Effective length of database: 878
Effective search space: 418806
Effective search space used: 418806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
