Query= MSMg01no372_h22.b1 MSMg01no372_h22.b1 CHROMAT_FILE:
MSMg01no372_h22.b1 PHD_FILE: MSMg01no372_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:15 2005
(390 letters)
>mm_chr4_34899098_34899889
Length = 792
Score = 698 bits (361), Expect = 0.0
Identities = 380/387 (98%), Gaps = 2/387 (0%)
Strand = Plus / Plus
Query: 6 gaattcaaggctcttttccctctggaccttcagggcagccagataatgcttttagcccaa 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaggctctttttcctctggaccttcagggcagccagataatgcttttagcccaa 265
Query: 66 agtgatattgacaaaccaaaaaccaaaaaccaac--ccccccccccaaaaaaaaaaacca 123
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 266 agtgatattgacaaaccaaaaaccaaaaaccaacctcccccccccccaaaaaaaaaacca 325
Query: 124 aaaccaaaccaaaacaaaaaaaccccaaaatccattgcctatcttggtctctaaaagtta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaccaaaccaaaacaaaaaaaccccaaaatccattgcctatcttggtctctaaaagtta 385
Query: 184 cttagagagaaaagaaaaatgtccctgtaggttggaacaagccagcaacatagcagtagt 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 cttagagagaaaagaaaaatgtccctgtaggttggaacaagctagcaacatagcagtagt 445
Query: 244 agcattggtcttcagaagacagcatctgagtggggcgatggtggcacacgcctttaatcc 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 agcattggtcttcagaagacagcatctgagtggggcgatggtggctcacgcctttaatcc 505
Query: 304 cagcactcgagaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaa 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaa 565
Query: 364 gtgagttccaggacagctatgggacac 390
|||||||||||||||||||||||||||
Sbjct: 566 gtgagttccaggacagctatgggacac 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 792
Length adjustment: 9
Effective length of query: 381
Effective length of database: 783
Effective search space: 298323
Effective search space used: 298323
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_h22.g1 MSMg01no372_h22.g1 CHROMAT_FILE:
MSMg01no372_h22.g1 PHD_FILE: MSMg01no372_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:15 2005
(307 letters)
>mm_chr4_35046907_35047613
Length = 707
Score = 557 bits (288), Expect = e-163
Identities = 300/304 (98%)
Strand = Plus / Minus
Query: 1 ctggtcttaaataagcacggatgtccagtaaacacaaaactatctacgagcttccctcgt 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 504 ctggtcttaaataagcacggatgtccagtaaacacaaaactatctgcgagcttcgctcgt 445
Query: 61 gtcgccatggcagcctcctagcctgtgctcccgccctcgtgggccactggttggctgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcgccatggcagcctcctagcctgtgctcccgccctcgtgggccactggttggctgttt 385
Query: 121 ggtggctgaagggaggggccggccagttaggcctgataggaaaactgctgttcctcccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtggctgaagggaggggccggccagttaggcctgataggaaaactgctgttcctcccag 325
Query: 181 ttggggaacaaggaggctcacccgcttctgcaatcaatgagggttgctgagagcatatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 ttggggaacaaggaggctcacccgcttctgcaatcaatgagggttgctgagagcatacgg 265
Query: 241 ttgtgtcagatcagctgcggcccttcacctaccatcttgactgagcaacactgaaatcct 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtgtcagaccagctgcggcccttcacctaccatcttgactgagcaacactgaaatcct 205
Query: 301 ggag 304
||||
Sbjct: 204 ggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
