Query= MSMg01no372_i04.b1 MSMg01no372_i04.b1 CHROMAT_FILE:
MSMg01no372_i04.b1 PHD_FILE: MSMg01no372_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:16 2005
(316 letters)
>mm_chr4_124075857_124076572
Length = 716
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%), Gaps = 2/313 (0%)
Strand = Plus / Minus
Query: 5 ggaattcttgttttgc-gaggaggaaacagccttacgacaggaagtggtatctgcaactc 63
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggaattcttg-tttgcagaggaggaaacagccttacgacaggaagtggtatctgcaactc 273
Query: 64 acgtggctggcaggattgtgagccagaaacgaatttcactgtgtcttagaattccaaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acgtggctggcaggattgtgagccagaaacgaatttcactgtgtcttagaattccaaatt 213
Query: 124 tggccctctatttttttcttttaatttaaatttttaccttttgcaatgtgactgccctgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tggccctctatttttttcttttaatttaaatttttaccttttgcaatgtgactgccctgc 153
Query: 184 tatctctcttcaggctctggcgggtcttcaacagagcaacaaggtgcagggggcttggct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tatctctcttcaggctctggcgggtcttcaacagagcaacaaggtgcagggggcttggct 93
Query: 244 tggctgtagaaaggtgtcgggggaggcataatctctgtgaggcagggcatgctgtgggag 303
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 92 tggctgtagaaaggtgtcgggggaggcagaagctctgtgaggcagggcatgctgtgggag 33
Query: 304 ggatacctgcctg 316
|||||||||||||
Sbjct: 32 ggatacctgcctg 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_i04.g1 MSMg01no372_i04.g1 CHROMAT_FILE:
MSMg01no372_i04.g1 PHD_FILE: MSMg01no372_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:16 2005
(314 letters)
>mm_chr4_123930877_123931589
Length = 713
Score = 574 bits (297), Expect = e-168
Identities = 308/315 (97%), Gaps = 7/315 (2%)
Strand = Plus / Plus
Query: 1 agaatctccggaaggttgatgatccctctcccagcctcctctttggctctggttgagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatctccggaaggttgatgatccctctcccagcctcctctttggctctggttgagcct 260
Query: 61 gtaaggagaggagaaactgaccatccaggttcacttccttcatggtggaaaacattctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaggagaggagaaactgaccatccaggttcacttccttcatggtggaaaacattctag 320
Query: 121 agccctggccactctcgaaatctcagaacaaagtgcagatcatccaatgggtcaccaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctggccactctcgaaatctcagaacaaagtgcagatcatccaatgggtcaccaacg 380
Query: 181 tccttttctttcactgtctttagaatgagcaaagtcagtctcctttggtggttccctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttttctttcactgtctttagaatgagcaaagtcagtctcctttggtggttccctgat 440
Query: 241 cactgtttt---ccccagaaaaccaagagagcagctcactcatccagagcagaaaggcat 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactg----ggcccccagaaaaccaagagagcagctcactcatccagagcagaaaggcat 496
Query: 298 ctcccctgagggttg 312
|||||||||||||||
Sbjct: 497 ctcccctgagggttg 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space: 214720
Effective search space used: 214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
