BAC Information

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BAC

Clone NameMSMg01-372K04
Chromosome4 (Build37)
Map Location 28,318,546 - 28,478,932
singlet/doubletdoublet
Overlap geneLOC665141
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
Downstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372K04.T7 (MSMg01no372_k04.b1)MSMg01-372K04.TJ (MSMg01no372_k04.g1)
ACCAG478853AG478854
length741752
length of high quality
(start - end)
649 (41 - 689)527 (69 - 595)
definitionCHROMAT_FILE: MSMg01no372_k04.b1 PHD_FILE: MSMg01no372_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:25 2005CHROMAT_FILE: MSMg01no372_k04.g1 PHD_FILE: MSMg01no372_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,478,595 - 28,478,932)(28,318,546 - 28,319,072)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGGCTGTACAAATAGGGAAATCTTGCTTAGCTCATCTGTGTAAGTCCTT
AGCTTAGCAATGGTTGTCTAGAAGCACAGAGAGGCCTTCTGTGGGAGACT
TAGGCTGAGGCTCTGTAGTCAAAGTCCTTCTCCATGCTCCCCAGAGGAGT
TTTGATGGAAGAGACAGTCCATGTTTATCCATAATACTTATTGACTGTTC
ATCATGTAAAATGGATGCATACCAACTCCTCAGGGTGGACCAGAGATTAA
ATACCTTTTCCCAGGGGAATGTCTAGAAAGGAAAGCTTATTGACTAAACC
CTCAGGCCTCTAGGTACCTCATTAGCATGGAGAAGTCTGTTCTGGGAGAC
ATGACAGATGTGGGGAGGGTAGAGATATTTTCCCAGCAAGAAATCTAGTA
GAGAGCAGGGAGACAACTACCATTCCAGATGGCTACTTAGCTAGTAGGGT
CTCAGACCATTTTACCTTACCAAGTCTACTGACATGGTTCACTGTCCCAC
AGAAATGCATACAGAGTTTCATTTTTAGTTTATCAGACTATGTTCCCTCA
TTTGAATAAACAACTTTCTCTAAAATCAATTTAAAATGTATTTCTCTATT
ATGTCATTTAATAATAATGGGCCATGACCCTGTAGGTGATACTCCCTCCA
AGTTAAATTACTCCTCAGTAATTTGCCAGCTCGTGTATGGG
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCTCCCTATTCCAAAGAACTCTTTTTCTTTC
TTTTTTGCCAGTTCAGTCCCTGAAGCAACGTCCAAAGATAAGAGACTCTT
TTATCTTGATCCTAAAAACTCCCTGGATTTTATTCAGTGTAATGATCCTA
GAATTCAAGGATTTTAGCTTGTCATTCTTTTTCTTCAGGCTGCCCATTGA
TGTTCAGAACAGCTGCCCTTTTTCTAAGTCCATAAATTCCTCATGTAAAT
CATACTGTTCTCTTATGGGAACAACTCAGTTCCCAAAATCCATCCCTGCA
AAGGGGCACTTGATGCCAGGTGACCACAGGCAGTGATTTGATTAGATTTT
TGCACTGCTTCTGAATTCCAGTCTTGGCATGTATAGAAGATTTTGACTAG
TTCCTGCACCACTATGCCAAATAAACCTGTGGCAGTTTCTGCATTCCCTT
ATAGGTGTTAGATGCTGTCTGTTCCCTAGTAACTTTTCTCCCAGTTAGGA
ATCATAGAGATGAGCAGCTGGTGCAGTGCTAAATAATAAAGGGAAAAAAA
TAAATTCCAGAAGTAATGTTGAGTACCTCACAGAATTAGATGTCAGAATG
GAGTAACTACTAGGAAAATGGGCATAAAAACACAACAAGATTTGGAGCGT
TAATTCTATTCAAGGCCCTGTTTGAGGGANCACTTTTTTCTGTGAGCCCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_k04.b1 MSMg01no372_k04.b1 CHROMAT_FILE:
MSMg01no372_k04.b1 PHD_FILE: MSMg01no372_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:25 2005
         (649 letters)



>mm_chr4_28477884_28478932
          Length = 1049

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Minus

                                                                        
Query: 312  tcaggcctctaggtacctcattagcatggagaagtctgttctgggagacatgacagatgt 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 tcaggcctctaggtacctcattagcatggagaagtctgttctgggagacatgacagatgt 990

                                                                        
Query: 372  ggggagggtagagatattttcccagcaagaaatctagtagagagcagggagacaactacc 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  ggggagggtagagatattttcccagcaagaaatctagtagagagcagggagacaactacc 930

                                                                        
Query: 432  attccagatggctacttagctagtagggtctcagaccattttaccttaccaagtctactg 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  attccagatggctacttagctagtagggtctcagaccattttaccttaccaagtctactg 870

                                                                        
Query: 492  acatggttcactgtcccacagaaatgcatacagagtttcatttttagtttatcagactat 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  acatggttcactgtcccacagaaatgcatacagagtttcatttttagtttatcagactat 810

                                                                        
Query: 552  gttccctcatttgaataaacaactttctctaaaatcaatttaaaatgtatttctctatta 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  gttccctcatttgaataaacaactttctctaaaatcaatttaaaatgtatttctctatta 750

                                                  
Query: 612  tgtcatttaataataatgggccatgaccctgtaggtga 649
            ||||||||||||||||||| ||||||||||||||||||
Sbjct: 749  tgtcatttaataataatggtccatgaccctgtaggtga 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no372_k04.g1 MSMg01no372_k04.g1 CHROMAT_FILE:
MSMg01no372_k04.g1 PHD_FILE: MSMg01no372_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:25 2005
         (527 letters)



>mm_chr4_28318346_28319272
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctccctattccaaagaactctttttctttcttttttgccagttcagtccctgaagcaa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctccctattccaaagaactttttttctttcttttttgccagttcagtccctgaagcaa 260

                                                                       
Query: 61  cgtccaaagataagagactcttttatcttgatcctaaaaactccctggattttattcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtccaaagataagagactcttttatcttgatcctaaaaactccctggattttattcagt 320

                                                                       
Query: 121 gtaatgatcctagaattcaaggattttagcttgtcattctttttcttcaggctgcccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatgatcctagaattcaaggattttagcttgtcattctttttcttcaggctgcccatt 380

                                                                       
Query: 181 gatgttcagaacagctgccctttttctaagtccataaattcctcatgtaaatcatactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgttcagaacagctgccctttttctaagtccataaattcctcatgtaaatcatactgt 440

                                                                       
Query: 241 tctcttatgggaacaactcagttcccaaaatccatccctgcaaaggggcacttgatgcca 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tctcttatgggaacaactcagttcccaaaatccatccctgcaatggggcacttgatgcca 500

                                                                       
Query: 301 ggtgaccacaggcagtgatttgattagatttttgcactgcttctgaattccagtcttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgaccacaggcagtgatttgattagatttttgcactgcttctgaattccagtcttggc 560

                                                                       
Query: 361 atgtatagaagattttgactagttcctgcaccactatgccaaataaacctgtggcagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtatagaagattttgactagttcctgcaccactatgccaaataaacctgtggcagttt 620

                                                                       
Query: 421 ctgcattcccttataggtgttagatgctgtctgttccctagtaacttttctcccagttag 480
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 621 ctgcattcccttataggtgttagatgccgtccgttccctagtaacttttctcccagttag 680

                                                          
Query: 481 gaatcatagagatgagcagctggtgcagtgctaaataataaagggaa 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatcatagagatgagcagctggtgcagtgctaaataataaagggaa 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)