ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCCATGTTCGGGCAATTACCTCCAGCTTGGAAGGTGTAAAAGAACTTTT
GAGGGTTTATTCCATGGCTATCCTTGCCAGGGAGGAGTGAAGCCCTGAAC
TAATTGGATGTCAGTCCTGACTTTCCTGTCATGAGGACCATGGTAACTGG
GTCATTCTTATATTAATCCTAGATAAGGAAATTTGGGGATTAAAATAAGT
TCCTGGATATTTCCAGGGCAAACTAGAGGGGAAACTGAGGTTCGGGGCCA
GAGAAGCTCTATTGTTTAAATCTTGAATTACTTTCCCTTTGTTCTTATTT
TTGTTCTCTCCTTTTCTACTCTGCTCCTGCACTTACTTGTAATATGGCGT
GGTATTGAAGCGAGCTATGGAATAACAAAGATTCATTTCATGAGTGCAGC
TTCTACCTACTCTCTGGCAGGATGGTGTAAATTGCTTTGTTTGTTGACTA
TCTCCTCAGCTAACACATGGGTTGTTAAGGTTGACAGTTATATAATGAAA
GTAGTCTTCTGCACCATGTAGCATCAGCATATCCCTAACGACCAGTGCTG
CTATGTTTTCCCGTGTTCATTATCTATTTGGTTCACACCTCTATTCTCTT
CTAGCTTGCCCCGATATTTTTTGACCTCCCTGGTATATTTACGATTACGT
CTTTTACCCTTGGTTCAACTCTTTAACTCTATAACTTGTTAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCACGAGGAATTCATTGGCTCATCTGATCTGTGGAGGAATGT
TCACTCGGGCCTATAATTAGAATCCACAAGTGAGGAAGGCTCTGTGTTTA
CTTCTATGACTCTGCTGAAGCCCTTTCCCCCTCTTTTTCTTTCTGACAAG
CCCTTATATTTGAGCAGTGATGATAACAATAATAACTATGCTGATTCAGA
GAGCTCCCTCTTATCAGTATGTATTGAGCAGCTTGTCTACATTTGTCTTT
AATCTTCAGAGTCTCCTTAAGGGAAACAAACATTCTCCCTGTTTTATAAG
TAGAGACGATGAGAATTGGAGAAATTAATTAGCTTGACTAAAGTCACACA
CACTTGGGCCCAGATCTGTATCACACACAAATCCTATTCTCTTAGACCAC
AGTGCTTCTAGAAACAGGGGGCTAGAAAACCTAGTGAAACAACTAGTCTA
TACTAAAGCTGTCCTTTCAAATTCAAAATACAGGATAGGCAAGGAGTGTT
CAAGGAGTGTTCAGCACAAAGTAGCACATGACAACTTTAGTTTTGTGCGT
TTGACTCCTCAGTTAAACATAAATCCCACCTAATTTCTTGTTTGTCTAGG
AGGCTTTTTGCCCCGGCAGTAATGAACTTTTCAATGTGTAGAAAAATAAT
AAACACCCCATTTGGCCACGTTAGAAATTTATCTTGTGGAAAATG

Query= MSMg01no372_n12.b1 MSMg01no372_n12.b1 CHROMAT_FILE:
MSMg01no372_n12.b1 PHD_FILE: MSMg01no372_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:41 2005
         (470 letters)



>mm_chr4_48958242_48959111
          Length = 870

 Score =  801 bits (414), Expect = 0.0
 Identities = 456/470 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattacctccagcttggaaggtgtaaaagaacttttgagggtttattccatggctatcct 60
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||
Sbjct: 201 aattacctccagcttggaaggtggaaaagaactgttgagggtttattccatggccctcct 260

                                                                       
Query: 61  tgccagggaggagtgaagccctgaactaattggatgtcagtcctgactttcctgtcatga 120
           || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tggcagggaggagtgaagccctgaactaattggatgtcagccctgactttcctgtcatga 320

                                                                       
Query: 121 ggaccatggtaactgggtcattcttatattaatcctagataaggaaatttggggattaaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactatggtaactgggtcattcttatattaatcctagataaggaaatttggggattaaa 380

                                                                       
Query: 181 ataagttcctggatatttccagggcaaactagaggggaaactgaggttcggggccagaga 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ataagttcctggatatttccagggcaaactagaggggatactgaggttcggggccagaga 440

                                                                       
Query: 241 agctctattgtttaaatcttgaattactttccctttgttcttatttttgttctctccttt 300
           ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 agctctattggctaaatcttgaattactttccttttgttcttatttttgttctctccttt 500

                                                                       
Query: 301 tctactctgctcctgcacttacttgtaatatggcgtggtattgaagcgagctatggaata 360
           ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tctactctgctcctatacttacttgtaatatggcgtggtattgaagtgagctatggaata 560

                                                                       
Query: 361 acaaagattcatttcatgagtgcagcttctacctactctctggcaggatggtgtaaattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaagattcatttcatgagtgcagcttctacctactctctggcaggatggtgtaaattg 620

                                                             
Query: 421 ctttgtttgttgactatctcctcagctaacacatgggttgttaaggttga 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgtttgttgactatctcctcagctaacacatgggttgttaaggttga 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_n12.g1 MSMg01no372_n12.g1 CHROMAT_FILE:
MSMg01no372_n12.g1 PHD_FILE: MSMg01no372_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:41 2005
         (257 letters)



>mm_chr4_49122253_49122909
          Length = 657

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggaaacaaacattctccctgttttataagtagagacgatgagaattggagaaattaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 539 aagggaaacaaacattctccctgttttataagtaaagacgatgagaattggagaaattaa 480

                                                                       
Query: 61  ttagcttgactaaagtcacacacacttgggcccagatctgtatcacacacaaatcctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttagcttgactaaagtcacacacacttgggcccagatctgtatcacacacaaatcctatt 420

                                                                       
Query: 121 ctcttagaccacagtgcttctagaaacagggggctagaaaacctagtgaaacaactagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 419 ctcttagaccacagtgcttctagaaacagggggctagaaaacctagttaaacaactagtc 360

                                                                       
Query: 181 tatactaaagctgtcctttcaaattcaaaatacaggataggcaaggagtgttcaaggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tatactaaagctgtcctttcaaattcaaaatacaggataggcaaggagtgttcaaggagt 300

                            
Query: 241 gttcagcacaaagtagc 257
           |||||||||||||||||
Sbjct: 299 gttcagcacaaagtagc 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)