Query= MSMg01no372_o10.b1 MSMg01no372_o10.b1 CHROMAT_FILE:
MSMg01no372_o10.b1 PHD_FILE: MSMg01no372_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:45 2005
(470 letters)
>mm_chr4_24849039_24849908
Length = 870
Score = 652 bits (337), Expect = 0.0
Identities = 454/543 (83%), Gaps = 82/543 (15%)
Strand = Plus / Minus
Query: 1 aagggaacctctaccccaagtgat-----------------actcttaagctttaaaagg 43
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 678 aagggaacctctaccccaagtgatactcttaaggttatcacactcttaagctttaaaagg 619
Query: 44 aggcactggttatgagaatgctcactgcctt----------------------------- 74
|||||||||||| ||||||||||||||||||
Sbjct: 618 aggcactggttaggagaatgctcactgccttgttggttggttgcttggttggttggttgc 559
Query: 75 ---gttggttggttgcctgcttgc-ttc-------------------cttgcttgcttgc 111
||||||||||||||||||||| ||| |||||||||||||
Sbjct: 558 ttggttggttggttgcctgcttgctttcttgcttgcttgcttgcttgcttgcttgcttgc 499
Query: 112 ----ttttttttttcctattttctgttgctacgacaaagtagctgggtctaggaagttta 167
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 498 ttgtttttttttttcctattttctgttgctaccacaaagtagctgggtctaggaagttta 439
Query: 168 ccaaataaaggagttcatttggattgcagtttctaaggctgaaaagccagtgtcacacag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccaaataaaggagttcatttggattgcagtttctaaggctgaaaagccagtgtcacacag 379
Query: 228 tgtcaggactccagtgagggctgcatcacatcacaatgggaaagcacaggtacatggtag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtcaggactccagtgagggctgcatcacatcacaatgggaaagcacaggtacatggtag 319
Query: 288 cctgctttttttttttttttttaggtattttcctcatttacatttccaatgctatcccaa 347
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 actgcttttttttttt------aggtattttcctcatttacatttccaatgctatcccaa 265
Query: 348 aagtctcccataccctccccccccccactcccctacccacccactcccactttttggtcc 407
||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 264 aagtcccccatgccctacccccc---actcccctacccacccactcccactttttggccc 208
Query: 408 tggcgttcccctgtactggggcatataaagtttgcatgtccaatgggcctctctttccag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tggcgttcccctgtactggggcatataaagtttgcatgtccaatgggcctctctttccag 148
Query: 468 tga 470
|||
Sbjct: 147 tga 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_o10.g1 MSMg01no372_o10.g1 CHROMAT_FILE:
MSMg01no372_o10.g1 PHD_FILE: MSMg01no372_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:45 2005
(115 letters)
>mm_chr4_24722499_24723013
Length = 515
Score = 199 bits (103), Expect = 4e-56
Identities = 112/115 (97%)
Strand = Plus / Plus
Query: 1 gtaatcaacaagtctcaacacatcatccttgtgttcacaaagcagtctcccacttacctc 60
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 201 gtaatcaacaagtctcaacacatcatccttgtattcgcaaagcagtctcccacttacctc 260
Query: 61 tcagctataaagctgcaaaagccctcacctctgcaaacctgacagcacacctgtg 115
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagctacaaagctgcaaaagccctcacctctgcaaacctgacagcacacctgtg 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space: 54249
Effective search space used: 54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
