BAC Information

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BAC

Clone NameMSMg01-372O12
Chromosome4 (Build37)
Map Location 51,688,071 - 51,902,535
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372O12.T7 (MSMg01no372_o12.b1)MSMg01-372O12.TJ (MSMg01no372_o12.g1)
ACCAG479061AG479062
length737746
length of high quality
(start - end)		624 (65 - 688)571 (70 - 640)
definitionCHROMAT_FILE: MSMg01no372_o12.b1 PHD_FILE: MSMg01no372_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:45 2005CHROMAT_FILE: MSMg01no372_o12.g1 PHD_FILE: MSMg01no372_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,688,071 - 51,688,694)(51,901,965 - 51,902,535)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATGTTTCCGAAGCAAGCATTTATGTGTATTAATAATGGCACGTTGAATG
CTGTCAACTATTCCTAGTATTTTAACTGTACCTAGAACTGGGAATTAAAA
TTAGTAACATGGGATTCAAAGTGACTTTGACAAGATTAATATGATGAAGG
ATGATAATAACCAGTTCAAATAATAATTAAGTCATTTTAGATGAATATGA
AAAAGACTGACTGGAGTGGGGGTGAAAAAGAGAAGAGAAAATTGGAAGAA
AAAAACAAAGTTTTTATGAAAAAAGAAACAGATAAGAACAATAAAAAAGT
AAAACTGATACAGTTAAACAGAAAGGCAAGAGGAAGAGAAGGCAAAAGAA
AAGCAATATGGATAACTATAACTTACAAATGCCAAGGCTAAACTGACAAA
CTACAAGATGGCTAAGGAATGAAAGAGGAAAGTAGCACAGTAAGGCATAT
TAATTGTAGAGCTAGCAAACATACTTATTAAGAGTGATTGAGTACAGTGT
GAGTCAAAAACATAATCACTGATTCATGAGTTAAACGAGGTGTTTTTGAG
ACAAGAGATGTAGCACCCAGTTAAACTGTCATTTTGTCAAGATTAAGATG
CTAGCAATATAGACATGTCATTACTACATACCTTGGATTCATCTGGCTGG
AATACAGACATGAATTGACTACATACATTTAATCTCN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTAGTTTTAGATAGAACTCATTAAGTAAGG
ATTGTCTTATTTCAGTAAAAAGAACATAATTCAAACCTAGAAATTATAAA
TAAAGTAGTGTTCACACTACTAGCTAGTCTGAATTTAAGTACGGATATTT
AGCATGCTAATATATACAAATGTATTCTGAATTAATATGTTCTACATCTA
GCAGGCTGTGAGGAAGTTATAAGAATGTTTCCTCATTGACTTTATAAAGT
GGATATGCAAATTTGTAAATACATAACCAGTGTGAAGGAATAAGTCGTGG
CAGGATGTATTAAAATGTGAATACCACTAGTAGATTTTGGAAAAATACTT
AGAAGTAGATAACCATGATGCATATAGGTAAGACAGATGTAACATTAATT
CAAATACTGCACAGTGTAGTTGAGTTGAAGACAATGAAACTTCCAAATCC
ACTATATCTGTATTCCTCTGCTCATGCCTGTGATTTGAAGGTAAAGAGTA
CTATCTCATCAAGAGACTTAGTCATAATTGAATGAAGTGGTTATTTAAAA
TATTACACACAAATAATGCTGGATTATCTCATTTGAGACATAAGTATGAC
CTTCTGGTGAGATAAATGAGAAGACTCAACGGGTTTTTGAAAAGTAAAGC
ACAAGGGCTTCCTATGCTGACCATACTGATCTTTTTGTTCTCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_o12.b1 MSMg01no372_o12.b1 CHROMAT_FILE:
MSMg01no372_o12.b1 PHD_FILE: MSMg01no372_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:45 2005
         (624 letters)



>mm_chr4_51687871_51688894
          Length = 1024

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcatttatgtgtattaataatggcacgttgaatgctgtcaactattcctagtatttta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aagcatttatgtgtattaataatggcacgttgaatgctgtcaaatattcctagtatttta 260

                                                                       
Query: 61  actgtacctagaactgggaattaaaattagtaacatgggattcaaagtgactttgacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtacctagaactgggaattaaaattagtaacatgggattcaaagtgactttgacaag 320

                                                                       
Query: 121 attaatatgatgaaggatgataataaccagttcaaataataattaagtcattttagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaatatgatgaaggatgataataaccagttcaaataataattaagtcattttagatga 380

                                                                       
Query: 181 atatgaaaaagactgactggagtgggggtgaaaaagagaagagaaaattggaagaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgaaaaagactgactggagtgggggtgaaaaagagaagagaaaattggaagaaaaaa 440

                                                                       
Query: 241 acaaagtttttatgaaaaaagaaacagataagaacaataaaaaagtaaaactgatacagt 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaagttaatatgaaaaaagaaacagataagaacaataaaaaagtaaaactgatacagt 500

                                                                       
Query: 301 taaacagaaaggcaagaggaagagaaggcaaaagaaaagcaatatggataactataactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaacagaaaggcaagaggaagagaaggcaaaagaaaagcaatatggataactataactt 560

                                                                       
Query: 361 acaaatgccaaggctaaactgacaaactacaagatggctaaggaatgaaagaggaaagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaatgccaaggctaaactgacaaactacaagatggctaaggaatgaaagaggaaagta 620

                                                                       
Query: 421 gcacagtaaggcatattaattgtagagctagcaaacatacttattaagagtgattgagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacagtaaggcatattaattgtagagctagcaaacatacttattaagagtgattgagta 680

                                                                       
Query: 481 cagtgtgagtcaaaaacataatcactgattcatgagttaaacgaggtgtttttgagacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtgtgagtcaaaaacataatcactgattcatgagttaaacgaggtgtttttgagacaa 740

                                                                       
Query: 541 gagatgtagcacccagttaaactgtcattttgtcaagattaagatgctagcaatatagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagatgtagcacccagttaaactgtcattttgtcaagattaagatgctagcaatatagac 800

                                   
Query: 601 atgtcattactacataccttggat 624
           ||||||||||||||||||||||||
Sbjct: 801 atgtcattactacataccttggat 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_o12.g1 MSMg01no372_o12.g1 CHROMAT_FILE:
MSMg01no372_o12.g1 PHD_FILE: MSMg01no372_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:45 2005
         (571 letters)



>mm_chr4_51901765_51902735
          Length = 971

 Score = 1073 bits (555), Expect = 0.0
 Identities = 567/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagttttagatagaactcattaagtaaggattgtcttatttcagtaaaaagaacataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 attagttttagatagaactcattaagtaaggattgtcttatttcagtaaaaagaacataa 712

                                                                       
Query: 61  ttcaaacctagaaattataaataaagtagtgttcacactactagctagtctgaatttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttcaaacctagaaattataaataaagtagtgttcacactactagctagtctgaatttaag 652

                                                                       
Query: 121 tacggatatttagcatgctaatatatacaaatgtattctgaattaatatgttctacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tacggatatttagcatgctaatatatacaaatgtattctgaattaatatgttctacatct 592

                                                                       
Query: 181 agcaggctgtgaggaagttataagaatgtttcctcattgactttataaagtggatatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agcaggctgtgaggaagttataagaatgtttcctcattgactttataaagtggatatgca 532

                                                                       
Query: 241 aatttgtaaatacataaccagtgtgaaggaataagtcgtggcaggatgtattaaaatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aatttgtaaatacataaccagtgtgaaggaataagtcgtggcaggatgtattaaaatgtg 472

                                                                       
Query: 301 aataccactagtagattttggaaaaatacttagaagtagataaccatgatgcatataggt 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 471 aataccactagtagattttggaaaaatacttagaaatagataaccatgatgcatataggt 412

                                                                       
Query: 361 aagacagatgtaacattaattcaaatactgcacagtgtagttgagttgaagacaatgaaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 411 aagacagatgtaacattaattcaaatactgcacagtgtagttgagttggagacactgaaa 352

                                                                       
Query: 421 cttccaaatccactatatctgtattcctctgctcatgcctgtgatttgaaggtaaagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cttccaaatccactatatctgtattcctctgctcatgcctgtgatttgaaggtaaagagt 292

                                                                       
Query: 481 actatctcatcaagagacttagtcataattgaatgaagtggttatttaaaatattacaca 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attatctcatcaagagacttagtcataattgaatgaagtggttatttaaaatattacaca 232

                                          
Query: 541 caaataatgctggattatctcatttgagaca 571
           |||||||||||||||||||||||||||||||
Sbjct: 231 caaataatgctggattatctcatttgagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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