Query= MSMg01no372_o16.b1 MSMg01no372_o16.b1 CHROMAT_FILE:
MSMg01no372_o16.b1 PHD_FILE: MSMg01no372_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:46 2005
(581 letters)
>mm_chr4_89346726_89347702
Length = 977
Score = 986 bits (510), Expect = 0.0
Identities = 525/532 (98%), Gaps = 4/532 (0%)
Strand = Plus / Minus
Query: 1 cattttgtcatcatttaatatgtgtaactcgctttaaaaaaacacacaaataaataaaca 60
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 528 cattttgtcatcatttaatatgtgtaactcgctttaaaaaaaaacac----aaataaaca 473
Query: 61 aacccaaggaattgatgctctactttcctgaattaagagtaacaaacctgaaattccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aacccaaggaattgatgctctactttcctgaattaagagtaacaaacctgaaattccaca 413
Query: 121 aggaagataatccaacaaaatttttacttgataaaagagggattgttacctggggaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aggaagataatccaacaaaatttttacttgataaaagagggattgttacctggggaataa 353
Query: 181 aagcaaactgtaacaaaatctccaatcagaataacattccctgatgattctctggaaaaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 352 aagcaaactgtaacaaaatctccaatcagaataacattccctgatggttctctggaaaaa 293
Query: 241 ttacacagactggtacaaacacactgaattaacctatctgctaccaaagactattgactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttacacagactggtacaaacacactgaattaacctatctgctaccaaagactattgactt 233
Query: 301 tcagactattgcaaacatgatgctcaagactcttattatttttattattatcattattat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcagactattgcaaacatgatgctcaagactcttattatttttattattatcattattat 173
Query: 361 tatacaaagagaagacaaattttctcagagaattactccctacgagagtctaatattcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tatacaaagagaagacaaattttctcagagaattactccctacgagagtctaatattcag 113
Query: 421 actctgcgatatctgaacttctctccacaaatcagcagcatggtggcggctgacatgcaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 112 actctgcgatatctgaacttctctccacaaatcagcagcatggtggcggctgccatgcaa 53
Query: 481 gttagtacaccaccctgctgggtagccctgctggtgacacagaaactcacac 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 gttagtacaccaccctgctgggtagccctgctggtgacacagaaactcacac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 977
Length adjustment: 10
Effective length of query: 571
Effective length of database: 967
Effective search space: 552157
Effective search space used: 552157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_o16.g1 MSMg01no372_o16.g1 CHROMAT_FILE:
MSMg01no372_o16.g1 PHD_FILE: MSMg01no372_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:46 2005
(499 letters)
>mm_chr4_89166546_89167444
Length = 899
Score = 870 bits (450), Expect = 0.0
Identities = 484/500 (96%), Gaps = 10/500 (2%)
Strand = Plus / Plus
Query: 1 tttcttactcaaagtgtactgattaaattaattgtatataaaaaggcttcaaggtgtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tttcttactcaaagtgtactgattaaattaattgtatataaaaaggcttcaaggtgtctg 268
Query: 61 accaaatgctttgcactgtagtatagccaagtgggcacataaaattaccactgtagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 accaaatgctttgcactgtagtatagccaagtgggcacataaaattaccactgtagaaga 328
Query: 121 taaagtatttatgatctttccagttggtcagagttgattttgtaagcctacagaattcag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaagtatttatgatcttgccagttggtcagagttgattttgtaagcctacagaattcag 388
Query: 181 agcctgcttttt-aaaaatttttattttattttttatttttttgcatttttgcttttttt 239
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 389 agcctgctttttcaaaaa-ttttattttattttttatttttttgcgtttttgc------- 440
Query: 240 tttttttttttttgctttagggatacgatcagtaaagaagtctcctgtccttatctgctt 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 -ttttttttttttgctttagggatacgatcaataaagaagtctcctgtccttatctgctt 499
Query: 300 cacactgtaaaatgagacccaaggtggctaggacattttatagctccatggaaatccatc 359
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 500 cacactgtaaaatgagacccaaggtggctaagacattttatagctccgtggaaatccatc 559
Query: 360 ctgataaagaaagcacccttcttggaactctcctccctgccccaactattatcacacagt 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 ctgataaagaaagcacccttcttggaactcccctccctgccccaactattatcacacagt 619
Query: 420 gctttattgacagctttgtgataagaactaatgcctatttaacttccttatttacattat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctttattgacagctttgtgataagaactaatgcctatttaacttccttatttacattat 679
Query: 480 agaaaaaactactaattgct 499
||||||||||||||||||||
Sbjct: 680 agaaaaaactactaattgct 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
