XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
CGGTGACATAATGAATGACTGAGAAGCACCTAAAGAAATGTTCAGCATTC
ATAGTCATAATGGAAATGCAAATCAAAATGACCCTGAGAATCTATACTCC
ACCAACCAATATGGCTAAGTTCAAAAACTTAGATGACAGTAGATGCTGGT
GAGGATGTGGAGAAAGAGAGACACTTCTCCATTGCTGGTGGGATTGAAAG
CTGGTATAAAAGCTCTGGAAATCATTCTGGTGTTTCCTCAGAAAACTGGA
CATAGTATTACCTGAGGACCCAGCTACACCACTCCTGGGCATATACCCAA
AAGATGCTCCAACATATATCAAGAACACATACTCTACTATGTTCACAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGGCCCCCAAT
AGAGGAATGGACACAGAAAATGTATCCATTTACATAATGGAGTACCACTT
GGCTATTAAAAACAATGTTTTCATGAAATTCTGAAGCAAATAGATGGAAC
TAACAATTGTGAATGAGGTAACCTAATCACAAAAGTACACACATGGTTCT
CACTCACTGATAAGTGGATATTAGCTTCAAAGCTCAGAATACTCAAAATA
CAATTCACAGACCATATGAAGCTCAAGAAGAAGGAAGACCATATAGCGGG
TACTACAGTCCTTCTTATAATAAGCACATAAATGTCTCCTGGA

GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCTTCCCAGAGGATCAAAAATGTCCTGTAGTCA
GACACTGTTGAACTGCCTCCTCATTTTTTAGACGTCAGCAATTCAATTTG
TTTCTCCATTAGTTCAATACTGCTTCACTTTTTTTTTTTTTTTTTACTAT
TTATTAGGGTATTGTTTATGTCCTAGAAAGTGATATTAAATGTTCAGGAG
GTATGAGAGGAGGAACCTCTAGCCAGATGTGCAAGTCATGTGTGAATTCT
GCAATGTGCTTTGCAGATAAGAAATGAGAATGAATATAGGTAATGTACTC
TTGGGTAAGGTAGGTTTCATGGTGTGGAGTAAGAAGCTGAATAAGTTTAG
AGTGAATGAAGAGTCAAGTCCAGGTGATGTCAAGTTTGTGTCAAGCACAT
GTGACAGAACTGGTGGGAAGTGACAAAGACACCAGAACTTAGGTCTATGC
CTCTTCAGACACAGACTCTATAGTCCAGAAAGCACAGAAGTGACAAAGAC
CCCAGAACTTAGGTCTATACCTCTTCAGACACAGACTCTATAGTCCAGAA
AGCACAGAAGTGACAAAGACACCAGAACTTAGGTCTATGCCTCTTCAGAC
ACATACTCTATAGTCCAGAAAGCACAAAAGCCGGTTTAAAACCTCAGTCT
CCTCTGTTGATGGAGCTAGCTTTTTCTGAAAGCCTACCCGAAAGAAGTCT
AAGGGGCCCTTTCTCATA

Query= MSMg01no372_o17.g1 MSMg01no372_o17.g1 CHROMAT_FILE:
MSMg01no372_o17.g1 PHD_FILE: MSMg01no372_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:46 2005
         (508 letters)



>mm_chr4_20666538_20667445
          Length = 908

 Score =  899 bits (465), Expect = 0.0
 Identities = 473/477 (99%), Gaps = 3/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttcccagaggatcaaaaatgtcctgtagtcagacactgttgaactgcctcctcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tgcttcccagaggatcaaaaatgtcctgtagtcagacactgttgaactgcctcctcattt 758

                                                                       
Query: 61  tttagacgtcagcaattcaatttgtttctccattagttcaatactgcttcac---ttttt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 757 tttagacgtcagcaattcaatttgtttctccattagttcaatactgcttcactttttttt 698

                                                                       
Query: 118 ttttttttttttactatttattagggtattgtttatgtcctagaaagtgatattaaatgt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttttttttttttactatttattagggtattgtttatgtcctagaaagtgatattaaatgt 638

                                                                       
Query: 178 tcaggaggtatgagaggaggaacctctagccagatgtgcaagtcatgtgtgaattctgca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcaggaggtatgagaggaggaacctctagccagatgtgcaagtcatgtgtgaattctgca 578

                                                                       
Query: 238 atgtgctttgcagataagaaatgagaatgaatataggtaatgtactcttgggtaaggtag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgtgctttgcagataagaaatgagaatgaatataggtaatgtactcttgggtaaggtag 518

                                                                       
Query: 298 gtttcatggtgtggagtaagaagctgaataagtttagagtgaatgaagagtcaagtccag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtttcatggtgtggagtaagaagctgaataagtttagagtgaatgaagagtcaagtccag 458

                                                                       
Query: 358 gtgatgtcaagtttgtgtcaagcacatgtgacagaactggtgggaagtgacaaagacacc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtgatgtcaagtttgtgtcaagcacatgtgacagaactggtgggaagtgacaaagacacc 398

                                                                    
Query: 418 agaacttaggtctatgcctcttcagacacagactctatagtccagaaagcacagaag 474
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 397 agaacttaggtctatgcctcttcagacacatactctatagtccagaaagcacagaag 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)