Query= MSMg01no373_b08.b1 MSMg01no373_b08.b1 CHROMAT_FILE:
MSMg01no373_b08.b1 PHD_FILE: MSMg01no373_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:58 2005
(562 letters)
>mm_chr4_53088368_53089333
Length = 966
Score = 714 bits (369), Expect = 0.0
Identities = 470/527 (89%), Gaps = 44/527 (8%)
Strand = Plus / Plus
Query: 55 tatagccaacaggcctgatcaccagga-accaggctgttaaaactttaaattccaggtt- 112
|||| ||||||||||||||||| || | ||||||| |||||||||||||||||||||||
Sbjct: 265 tatacccaacaggcctgatcacaag-acaccaggccgttaaaactttaaattccaggttc 323
Query: 113 ----ttaagt---------gaccatgttagctcagcattcactaatgtgaatgaacctca 159
|| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccattcagttttttttgtgaccatgttagctcagcattcactaatgtgaatgaacctca 383
Query: 160 atgggtctcaagttctaagtccaagataaaggaggccctgggagactcagaagcccaagt 219
|||||||||||||||||| || ||| ||||| || |||||
Sbjct: 384 atgggtctcaagttctaa-----ag-taagggaggtcc------------aagcc----- 420
Query: 220 cattgaatttagaaaaagggaccttaaaacctacaaagtggaaag----gctttgcctgc 275
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 421 -attgaatttagaaaaagggaccttaaaacctacaaagtggaaagaaaggctttgcctgc 479
Query: 276 agtcagagggctcaggatgttttttgttcctccaccagagagctcaggacttcctctgct 335
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 480 agtcagagggctcaggacattctttgttcctccaccagagagctcaggccttcctctgct 539
Query: 336 ctactaccagggctcctttaggatccaacttgctggtgggacaacctgggtgggagcaaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctactaccagggctcctttaggatccaacttgctggtgggacaacctgggtgggagcaaa 599
Query: 396 cttgagcagagaacacagggccattgtgccaagtgtcttttgaggttcttgtaccatgcc 455
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 600 cttgagcagagaacacagggccattgtgccaactctcttttgaggttcttgtaccatgcc 659
Query: 456 ttaaggaatacgctggttagtctacacagaaactagagtcactcaggaagaaggaccctc 515
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttaatgaatacgctggttagtctacacagaaactagagtcactcaggaagaaggaccctc 719
Query: 516 aattgaggaactgcctctaccatattgtcctatagacatgtctgtgg 562
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aattgaggaactgcctctaccatattgtcctatagacatgtctgtgg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 966
Length adjustment: 10
Effective length of query: 552
Effective length of database: 956
Effective search space: 527712
Effective search space used: 527712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_b08.g1 MSMg01no373_b08.g1 CHROMAT_FILE:
MSMg01no373_b08.g1 PHD_FILE: MSMg01no373_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:58 2005
(423 letters)
>mm_chr4_53269539_53270360
Length = 822
Score = 793 bits (410), Expect = 0.0
Identities = 419/422 (99%), Gaps = 1/422 (0%)
Strand = Plus / Minus
Query: 1 tctgtttataactcaagagaccaaggtccgtgagataatctgtcttctcaacccagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtttataactcaagagaccaaggtccgtgagataatctgtcttctcaacccagagcc 562
Query: 61 tatccttcactccaccaatgtggaggagacacactgaagtggaactttacagcaatgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatccttcactccaccaatgtggaggagacacactgaagtggaactttacagcaatgaat 502
Query: 121 gggttcaagggctctctcctgtcagggttgatttgcaagactcttgccccctgcagattt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 gggttcaagggctctctcctgtcagggttgatttgcaagactcttgccccctgcagtttt 442
Query: 181 cctcatgatctattatcactgatagaattcctgaaacactaaatccccactatgactcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcatgatctattatcactgatagaattcctgaaacactaaatccccactatgactcag 382
Query: 241 actgagttcagatgtgtacttcaggggccatcaattgtcctgtgcactttggatattggg 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgagttcagatgtgtatttcaggggccatcaattgtcctgtgcactttggatattggg 322
Query: 301 aaatgatgaatattgaaacaaagtgtatggaatatgagagtgaatgcttctagcaagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgatgaatattgaaacaaagtgtatggaatatgagagtgaatgcttctagcaagtca 262
Query: 361 aagttggggggggggatattttacacccactcgcaacacataaaagctgctccaatgatc 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtt-gggggggggatattttacacccactcgcaacacataaaagctgctccaatgatc 203
Query: 421 ta 422
||
Sbjct: 202 ta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space: 336582
Effective search space used: 336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
