BAC Information

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BAC

Clone NameMSMg01-373B19
Chromosome4 (Build37)
Map Location 32,515,985 - 32,516,463
singlet/doubletsinglet
Overlap geneBach2
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232
Downstream geneGja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373B19.T7 (MSMg01no373_b19.b1)MSMg01-373B19.TJ (MSMg01no373_b19.g1)
ACCAG479218AG479219
length736744
length of high quality
(start - end)		512 (10 - 521)480 (60 - 539)
definitionCHROMAT_FILE: MSMg01no373_b19.b1 PHD_FILE: MSMg01no373_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:00 2005CHROMAT_FILE: MSMg01no373_b19.g1 PHD_FILE: MSMg01no373_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTCCGAGGATCCGCGGAATTCTCTAAAAAGTCAAAATGAAACCCCACT
GCTGGGTGTGTTTCCAAAGGAAATAAATACAGTATGTTTGTATCCCTGTA
CTTACTGCTGCAGCACAATGCTCAGTAGCTAATTCTCTATAATAGATAGA
GGAAGTACAGGATATGCACACAGTAGAATACAATAGAGCATAAAACGCAC
AAACCCTGCTATTTGTAACTACATAGATGGTCACATGGGAAGTTGTACAA
GTCAAATCAGCCAGGCACGGAGAGGCACGATTGCAGTAGTTCACTCACAT
GTACAGTCTAGCGTAGATTTCATAGGCACAGAAAAGAAAATGCGGATGGG
ATGGCTAGATGGCAGAAGAGATTGGAAGATGGTGGTCAAAGAACCCATAG
CTATTAAATAAACAGTTCATCTGAGAGCCGCCGTACAGTGAGTAGTTAGT
GACAATATGGAACATTCCTGAAAACTGATGAGAAAGCACACGTGTTATTA
TCACAGAATGATAACGAATGCATTTGTTAGTTAGCTTGATTCATCCATTC
CACAGTGTGGNCATACTTCAAAACAGTATTTTATACATGAGACAGCCCTT
ACAATTAATGTGGCCCCTAAAATCAGTAAGACTGAAGAGAGATTGGCTTA
TAAATATATTCTAACCCCAAAACGGGAAAGTCTGTTTTGGCCCCAAATTT
CCAAAAGCCGAATTTAATTCTTCTTCCCCCCCAAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCACTCGAGTAAATTACATTACTTAGACAGACCTGAAGGCAC
CGTGCTGGAATGAGTGCAGAAAAGGAGAAGTCTGTCAGCACAAAGCTGAG
AACGTTGCCATTTAGCCAACTGCAGGATGCACAGCGCTGGCTGTGTGGGA
CCTGGAAGGGACAATATTCCGGTCTGTTGTTAGCTTATAGACGTGACAGA
TATGTACAGTTGACCCTAGGGAACGGGTATAAGCTGATTTCTGTGATCTG
GTCAACATTGTGTTTCCCTTATTATTTACAGTTGGGTGGCAATAGGGGGT
CAGTGTACATTTGCCGTTCTTTCTTTTTCTCTGTTGTGAGAATCTAACCC
CTGCCCCCTCGGTAGCACTGTTCACCTCATTTCCAGCCCCACTGTCATAA
AACACATGGTCGCCATGGTCAGGTGGAATGTGTCTGTAATCCCACCTACT
GGAGAGACAGAGGCAGGAGGATTGCATAAGAACTCTTTTTCTCACACTGT
GTCTTTCTGAGAGTTGATCTGTCTGGGTAGGAATTGTGACAAGAGATTAA
ACTTCTGTGATGACCCCCTCTCCTCTCCTTCCTTACTGAACCTGGCCTTG
TCTCCCTTTTTTTTGGGTGGTATGCCCCTCTACCCCCGAATTACACCTAC
TCCAGGGGCCCCTTAAATCCACTCACCCCCTTCTCTTGTTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_b19.g1 MSMg01no373_b19.g1 CHROMAT_FILE:
MSMg01no373_b19.g1 PHD_FILE: MSMg01no373_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:00 2005
         (480 letters)



>mm_chr4_32515785_32516663
          Length = 879

 Score =  866 bits (448), Expect = 0.0
 Identities = 472/480 (98%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcgagtaaattacattacttagacagacctgaaggcaccgtgctggaatgagtgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcgagtaaattacattacttagacagacctgaaggcaccgtgctggaatgagtgcag 260

                                                                       
Query: 61  aaaaggagaagtctgtcagcacaaagctgagaacgttgccatttagccaactgcaggatg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aaaaggagaagtctgtcagcacaaagctgagaacgttgccatatagccaactgcaggatg 320

                                                                       
Query: 121 cacagcgctggctgtgtgggacctggaagggacaatattccggtctgttgttagcttata 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cacagcgctggctgtgtgggacctggaagggacaatgttccggtctgttgttagcttata 380

                                                                       
Query: 181 gacgtgacagatatgtacagttgaccctagggaacgggtataagctgatttctgtgatct 240
           |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 381 gacgtgacagatatgtacagttga-cctagagaatgggtataagctgatttctgtgatct 439

                                                                       
Query: 241 ggtcaacattgtgtttcccttattatttacagttgggtggcaatagggggtcagtgtaca 300
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtcagcattgggtttcccttattatttacagttgggtggcaatagggggtcagtgtaca 499

                                                                       
Query: 301 tttgccgttctttctttttctctgttgtgagaatctaacccctgccccctcggtagcact 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttgccattctttctttttctctgttgtgagaatctaacccctgccccctcggtagcact 559

                                                                       
Query: 361 gttcacctcatttccagccccactgtcataaaacacatggtcgccatggtcaggtggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttcacctcatttccagccccactgtcataaaacacatggtcgccatggtcaggtggaat 619

                                                                       
Query: 421 gtgtctgtaatcccacctactggagagacagaggcaggaggattgcataagaactctttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgtctgtaatcccacctactggagagacagaggcaggaggattgcataagaactctttt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space:   408430
Effective search space used:   408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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