Query= MSMg01no373_n14.b1 MSMg01no373_n14.b1 CHROMAT_FILE:
MSMg01no373_n14.b1 PHD_FILE: MSMg01no373_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:54 2005
(506 letters)
>mm_chr4_46800786_46801691
Length = 906
Score = 924 bits (478), Expect = 0.0
Identities = 499/506 (98%)
Strand = Plus / Plus
Query: 1 ttctgggaaaagccagccttgctgggcagtccagtcccatcagtcccttccctttccact 60
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ttctgggaaaagtcagccttgctgggcagtccaggcccatcagtcccttccctttccact 260
Query: 61 gcctccagccagcagctcatgggttctctctgtcttttgccctcaccctcagagacctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctccagccagcagctcatgggttctctctgtcttttgccctcaccctcagagacctct 320
Query: 121 ggaccatctcagaggtggacacccttaaggactggaaccaagcaaggccacaggtcccag 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaccatctcagaggtgttcacccttaaggactggaaccaagcaaggccacaggtcccag 380
Query: 181 gctctggaaatggccctaggatatgggcagggaactcagagcatgggttagaagatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctggaaatggccctaggatatgggcagggaactcagagcatgggttagaagatatgt 440
Query: 241 ctaacactttgtcttctgatatgatgcagtcatttactaagttcacaatccagatcaagt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaacactttgccttctgatatgatgcagtcatttactaagttcacaatccagatcaagt 500
Query: 301 tgcagatcaagttacaaaaaagtattgcaacccccttcaatgttttaggcttatgactgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcagatcaagttacaaaaaagtattgcaacccccttcaatgttttaggcttatgactgc 560
Query: 361 ttctgtgttgggctgtgttcatggctatccttggctgcatgcatgttagatatgctgaat 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ttctgtgttgggctgtgttcatggctatccttggctgcatgcgtgttagatatgctgaat 620
Query: 421 tgagattttagaaggttctagctctgtcctcacagtcctgtgattctgagccttgatgga 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagattttagaaggttctagctctatcctcacagtcctgtgattctgagccttgatgga 680
Query: 481 aaggccatcttggaacacagaccctg 506
||||||||||||||||||||||||||
Sbjct: 681 aaggccatcttggaacacagaccctg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_n14.g1 MSMg01no373_n14.g1 CHROMAT_FILE:
MSMg01no373_n14.g1 PHD_FILE: MSMg01no373_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:54 2005
(471 letters)
>mm_chr4_46987665_46988535
Length = 871
Score = 594 bits (307), Expect = e-174
Identities = 401/471 (85%), Gaps = 61/471 (12%)
Strand = Plus / Minus
Query: 1 ttgaccctcttgcctatacatccggaagtgctgggattgtgggtgtgtggcaccatgctc 60
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 593 ttgaccctcttgcctatacatctgg-agtgctgggattgtgggtgtgtggcaccatgccc 535
Query: 61 agtttatgtaaggctgggggtcaaatgcaggactttatggatgctaggctagcactctat 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 534 agtttatgtaaggctgggggtcaaatgcaggactttatgaatgctaggctagcactctat 475
Query: 121 caactgagctacacaccctcagcccctgtccttaacagttggtagtggaacatcatgtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caactgagctacacaccctcagcccctgtccttaacagttggtagtggaacatcatgtag 415
Query: 181 gacaggtagagcaaaggaaaccatgccagccctgaagaagggacaaagtctgatgtgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gacaggtagagcaaaggaaaccatgccagccctgaagaagggacaaagtctgatgtgtat 355
Query: 241 ggaaggtctgtttctctttgttggaagctgtgaaccacccaaggatgaaacctgagctca 300
||||||
Sbjct: 354 ggaagg------------------------------------------------------ 349
Query: 301 cagatcactgtgcctgagtcaggggcagaggacataggagaaggggcatgggagagcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ----tcactgtgcctgagtcaggggcagaggacataggagaaggggcatgggagagcttt 293
Query: 361 gtagacaccctcttctagcctccctcaatttgatagacagtagcggtggcagcaaggaaa 420
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtagacgccctcttctatcctccctcaatttgatagacagtagcggtggcagcaaggaaa 233
Query: 421 gagctgcagctttggggggggacttcacccacaaagctgggagtcccagag 471
||||||||||||||| || | |||||||||| |||||||||| |||||||
Sbjct: 232 gagctgcagctttggaggag--cttcacccacgaagctgggagccccagag 184
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
